Evidence map›Paper›PMID 30601118›Full record

ArticleeLife2019

Synergy between RecBCD subunits is essential for efficient DNA unwinding.

Rani Zananiri, Omri Malik, Sergei Rudnizky, Vera Gaydar, Roman Kreiserman, Arnon Henn, Ariel Kaplan

Abstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Rani ZananiriFaculty of Biology, Technion - Israel Institute of Technology, Haifa, Israel.ORCID 0000-0002-0094-4197
Omri MalikFaculty of Biology, Technion - Israel Institute of Technology, Haifa, Israel.
Sergei RudnizkyFaculty of Biology, Technion - Israel Institute of Technology, Haifa, Israel.
Vera GaydarFaculty of Biology, Technion - Israel Institute of Technology, Haifa, Israel.
Roman KreisermanFaculty of Biology, Technion - Israel Institute of Technology, Haifa, Israel.
Arnon HennFaculty of Biology, Technion - Israel Institute of Technology, Haifa, Israel.ORCID 0000-0001-6360-7211
Ariel KaplanFaculty of Biology, Technion - Israel Institute of Technology, Haifa, Israel.ORCID 0000-0002-9731-6962

Funding

Israel Centers of Research Excellence 1902/12Israeli Centers for Research Excellence 1902/12Israel Science Foundation 1403705/11Israel Science Foundation 1782/17Israel Science Foundation 293/13
6 · The paper itself

Abstract

The subunits of the bacterial RecBCD act in coordination, rapidly and processively unwinding DNA at the site of a double strand break. RecBCD is able to displace DNA-binding proteins, suggesting that it generates high forces, but the specific role of each subunit in the force generation is unclear. Here, we present a novel optical tweezers assay that allows monitoring the activity of RecBCD's individual subunits, when they are part of an intact full complex. We show that RecBCD and its subunits are able to generate forces up to 25-40 pN without a significant effect on their velocity. Moreover, the isolated RecD translocates fast but is a weak helicase with limited processivity. Experiments at a broad range of [ATP] and forces suggest that RecD unwinds DNA as a Brownian ratchet, rectified by ATP binding, and that the presence of the other subunits shifts the ratchet equilibrium towards the post-translocation state.

Indexed as

Adenosine TriphosphateBase SequenceDNA, BacterialDNA-Binding ProteinsDNA HelicasesDNA, Single-StrandedEscherichia coliEscherichia coli ProteinsExodeoxyribonuclease VKineticsOptical TweezersProtein BindingProtein ConformationProtein SubunitsAdenosine TriphosphateDNA, BacterialDNA-Binding ProteinsDNA HelicasesDNA, Single-StrandedEscherichia coli ProteinsExodeoxyribonuclease VProtein Subunitsbiochemistrychemical biologyE. colihelicasemolecular biophysicsoptical tweezersRecBCDsingle molecule biophysicsstructural biology

Identifiers

PMID30601118
PMCPMC6338465

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.