Evidence map›Paper›PMID 30599066›Full record

ArticleCellular and molecular life sciences : CMLS2019

Mammalian class I odorant receptors exhibit a conserved vestibular-binding pocket.

Caroline Bushdid, Claire A de March, Jérémie Topin, Matthew Do, Hiroaki Matsunami, Jérôme Golebiowski

Abstract read
In one paragraph

Article in Cellular and molecular life sciences : CMLS, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Caroline BushdidInstitute of Chemistry - Nice, UMR CNRS 7272, Université Côte d'Azur, Nice, France.
Claire A de MarchDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC, 27710, USA.
Jérémie TopinInstitute of Chemistry - Nice, UMR CNRS 7272, Université Côte d'Azur, Nice, France.
Matthew DoDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC, 27710, USA.
Hiroaki MatsunamiDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC, 27710, USA. hiroaki.matsunami@duke.edu.
Jérôme GolebiowskiInstitute of Chemistry - Nice, UMR CNRS 7272, Université Côte d'Azur, Nice, France. jerome.golebiowski@unice.fr.ORCID http://orcid.org/0000-0002-3675-1952

Funding

Molecular Mechanisms Underlying Odorant RecognitionR01DC005782 · NIDCD · DUKE UNIVERSITY · PI MATSUNAMI, HIROAKI · 2002 to 2012
$3.5M
Peripheral Odor Coding in MammalsR01DC014423 · NIDCD · DUKE UNIVERSITY · PI MATSUNAMI, HIROAKI · 2015 to 2019
$2.3M
Biogenesis of olfactory G protein-coupled receptorsR01DC016224 · NIDCD · DUKE UNIVERSITY · PI MATSUNAMI, HIROAKI · 2017 to 2021
$2.2M
Modulation of Odorant Receptor FunctionR01DC012095 · NIDCD · DUKE UNIVERSITY · PI MATSUNAMI, HIROAKI · 2012 to 2016
$1.8M
Data commons for 'omic, microscopy and analysis core facilitiesS10OD018164 · OD · DUKE UNIVERSITY · PI WRAY, GREGORY A. · 2014 to 2014
$598k
NIDCD NIH HHS R01 DC005782NIDCD NIH HHS R01 DC012095NIDCD NIH HHS R01 DC014423NIDCD NIH HHS R01 DC016224NIH HHS S10 OD018164
6 · The paper itself

Abstract

Odorant receptors represent the largest family of mammalian G protein-coupled receptors. Phylogenetically, they are split into two classes (I and II). By analyzing the entire subclass I odorant receptors sequences, we identified two class I-specific and highly conserved motifs. These are predicted to face each other at the extra-cellular portion of the transmembrane domain, forming a vestibular site at the entrance to the orthosteric-binding cavity. Molecular dynamics simulation combined with site-directed mutagenesis and in vitro functional assays confirm the functional role of this vestibular site in ligand-driven activation. Mutations at this part of the receptor differentially affect the receptor response to four agonists. Since this vestibular site is involved in ligand recognition, it could serve ligand design that targets specifically this sub-genome of mammalian odorant receptors.

Indexed as

Amino Acid MotifsBinding SitesConserved SequenceHumansModels, MolecularMolecular Dynamics SimulationReceptors, OdorantReceptors, OdorantBindingGPCRMechanismMolecular modelingMutantOlfactory

Identifiers

PMID30599066
PMCPMC7313674

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.