ArticleApplications in plant sciences2018
Shape outline extraction software (DiaOutline) for elliptic Fourier analysis application in morphometric studies.
Article in Applications in plant sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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7 citing papers in PubMed.
- Morphometrics and Phylogenomics of Coca (Erythroxylum spp.) Illuminate Its Reticulate Evolution, With Implications for Taxonomy.Molecular biology and evolution · 2024Article
- A pre-Campanian Ignimbrite techno-cultural shift in the Aurignacian sequence of Grotta di Castelcivita, southern Italy.Scientific reports · 2024Article
- Phylotranscriptomics reveals the reticulate evolutionary history of a widespread diatom species complex.Journal of phycology · 2022Article
- The contribution of integrated 3D model analysis to Protoaurignacian stone tool design.PloS one · 2022Article
- Article
- Morphological Analysis of Size and Shape (MASS): An integrative software program for morphometric analyses of leaves.Applications in plant sciences · 2019Article
- Shape outline extraction software (DiaOutline) for elliptic Fourier analysis application in morphometric studies.Applications in plant sciences · 2018Article
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2 authors.
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Abstract
premise of the studyStudies of plant cell and organ outline using shape analysis for taxonomic and morphological research have increased in the past decade. However, there are a limited number of available modern, intuitive, and easy software tools to conduct this work.
methodsWe developed a tool for shape outline extraction using MATLAB accompanied with R scripts to perform elliptic Fourier analysis. To demonstrate the shape tool, we applied the software and scripts for genera and species shape determinations of diatom (single cell) species with x-, y-, and x- + y-shape symmetries.
resultsUsing the shape analysis tool, we were able to identify and distinguish different diatom taxa based on forms representing size diminutions associated with population changes. DISCUSSION: Independent of symmetry, species were successfully distinguished using supervised and unsupervised analyses. We hope that these shape analysis tools will be used to add another metric to plant science studies.
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