Evidence map›Paper›PMID 30597924›Full record

ArticleBiomolecules2018

Delineating the Dynamic Transcriptome Response of mRNA and microRNA during Zebrafish Heart Regeneration.

Hagen Klett, Lonny Jürgensen, Patrick Most, Martin Busch, Fabian Günther, Gergana Dobreva, Florian Leuschner, David Hassel, Hauke Busch, Melanie Boerries

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Inhibition ofJournal of cardiovascular development and disease · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Hagen KlettInstitute of Molecular Medicine and Cell Research, University of Freiburg, 79104 Freiburg, Germany. hagen.klett@gmail.com.
Lonny JürgensenDepartment of Cardiology, Angiology and Pneumology, University Hospital Heidelberg, 69120 Heidelberg, Germany. Lonny.Juergensen@med.uni-heidelberg.de.ORCID 0000-0001-7958-2952
Patrick MostDepartment of Cardiology, Angiology and Pneumology, University Hospital Heidelberg, 69120 Heidelberg, Germany. Patrick.Most@med.uni-heidelberg.de.
Martin BuschDepartment of Cardiology, Angiology and Pneumology, University Hospital Heidelberg, 69120 Heidelberg, Germany. Martin.Busch@med.uni-heidelberg.de.
Fabian GüntherDepartment of Cardiology, Angiology and Pneumology, University Hospital Heidelberg, 69120 Heidelberg, Germany. f.guenther@rbk.de.
Gergana DobrevaDepartment of Anatomy and Developmental Biology, Medical Faculty Mannheim, Heidelberg University, 68167 Mannheim, Germany. gergana.dobreva@medma.uni-heidelberg.de.
Florian LeuschnerDepartment of Cardiology, Angiology and Pneumology, University Hospital Heidelberg, 69120 Heidelberg, Germany. Florian.Leuschner@med.uni-heidelberg.de.
David HasselDepartment of Cardiology, Angiology and Pneumology, University Hospital Heidelberg, 69120 Heidelberg, Germany. david.hassel@gmail.com.
Hauke BuschLuebeck Institute of Experimental Dermatology and Institute of Cardiogenetics, University of Luebeck, 23562 Luebeck, Germany. hauke.busch@uni-luebeck.de.ORCID 0000-0003-4763-4521
Melanie BoerriesInstitute of Molecular Medicine and Cell Research, University of Freiburg, 79104 Freiburg, Germany. m.boerries@dkfz.de.ORCID 0000-0002-3670-0602
Heidelberg University · DEUniversity of Freiburg · DEInstitute for Integrative and Experimental Genomics · DEThomas Jefferson University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Heart diseases are the leading cause of death for the vast majority of people around the world, which is often due to the limited capability of human cardiac regeneration. In contrast, zebrafish have the capacity to fully regenerate their hearts after cardiac injury. Understanding and activating these mechanisms would improve health in patients suffering from long-term consequences of ischemia. Therefore, we monitored the dynamic transcriptome response of both mRNA and microRNA in zebrafish at 1⁻160 days post cryoinjury (dpi). Using a control model of sham-operated and healthy fish, we extracted the regeneration specific response and further delineated the spatio-temporal organization of regeneration processes such as cell cycle and heart function. In addition, we identified novel (miR-148/152, miR-218b and miR-19) and previously known microRNAs among the top regulators of heart regeneration by using theoretically predicted target sites and correlation of expression profiles from both mRNA and microRNA. In a cross-species effort, we validated our findings in the dynamic process of rat myoblasts differentiating into cardiomyocytes-like cells (H9c2 cell line). Concluding, we elucidated different phases of transcriptomic responses during zebrafish heart regeneration. Furthermore, microRNAs showed to be important regulators in cardiomyocyte proliferation over time.

Indexed as

TranscriptomeAnimalsCell DifferentiationCell LineCell ProliferationCluster AnalysisHeartMicroRNAsMyocytes, CardiacPrincipal Component AnalysisRatsRegenerationRNA, MessengerZebrafishMicroRNAsRNA, Messengercryoinjurydynamic transcriptomeheart regenerationmiRNAzebrafish

Identifiers

PMID30597924
PMCPMC6359357
OpenAlexW2908353251

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.