Evidence map›Paper›PMID 30596695›Full record

ArticlePloS one2018

Assignment of a dubious gene cluster to melanin biosynthesis in the tomato fungal pathogen Cladosporium fulvum.

Scott A Griffiths, Russell J Cox, Elysa J R Overdijk, Carl H Mesarich, Benedetta Saccomanno, Colin M Lazarus, Pierre J G M de Wit, Jérôme Collemare

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Scott A GriffithsFungal Natural Products, Westerdijk Fungal Biodiversity Institute, CT, Utrecht, The Netherlands.
Russell J CoxInstitut für Organische Chemie, Leibniz Universität Hannover, Hannover.
Elysa J R OverdijkLaboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands.
Carl H MesarichLaboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands.
Benedetta SaccomannoLaboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands.
Colin M LazarusSchool of Biological Sciences, University of Bristol, Bristol, United Kingdom.
Pierre J G M de WitLaboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands.
Jérôme CollemareFungal Natural Products, Westerdijk Fungal Biodiversity Institute, CT, Utrecht, The Netherlands.ORCID 0000-0001-8152-6642
Wageningen University & Research · NLWesterdijk Fungal Biodiversity Institute · NLLeibniz University Hannover · DEUniversity of Bristol · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pigments and phytotoxins are crucial for the survival and spread of plant pathogenic fungi. The genome of the tomato biotrophic fungal pathogen Cladosporium fulvum contains a predicted gene cluster (CfPKS1, CfPRF1, CfRDT1 and CfTSF1) that is syntenic with the characterized elsinochrome toxin gene cluster in the citrus pathogen Elsinoë fawcettii. However, a previous phylogenetic analysis suggested that CfPks1 might instead be involved in pigment production. Here, we report the characterization of the CfPKS1 gene cluster to resolve this ambiguity. Activation of the regulator CfTSF1 specifically induced the expression of CfPKS1 and CfRDT1, but not of CfPRF1. These co-regulated genes that define the CfPKS1 gene cluster are orthologous to genes involved in 1,3-dihydroxynaphthalene (DHN) melanin biosynthesis in other fungi. Heterologous expression of CfPKS1 in Aspergillus oryzae yielded 1,3,6,8-tetrahydroxynaphthalene, a typical precursor of DHN melanin. Δcfpks1 deletion mutants showed similar altered pigmentation to wild type treated with DHN melanin inhibitors. These mutants remained virulent on tomato, showing this gene cluster is not involved in pathogenicity. Altogether, our results showed that the CfPKS1 gene cluster is involved in the production of DHN melanin and suggests that elsinochrome production in E. fawcettii likely involves another gene cluster.

Indexed as

Gene Expression Regulation, FungalMultigene FamilyCladosporiumGene OrderGenes, FungalHost-Pathogen InteractionsMelaninsPhenotypePhylogenyPigmentationSolanum lycopersicumMelanins

Identifiers

PMID30596695
PMCPMC6312243
OpenAlexW2907980155

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.