Evidence map›Paper›PMID 30595533›Full record

ArticleDevelopmental cell2019

Single-Cell Analysis Reveals a Hair Follicle Dermal Niche Molecular Differentiation Trajectory that Begins Prior to Morphogenesis.

Khusali Gupta, Jonathan Levinsohn, George Linderman, Demeng Chen, Thomas Yang Sun, Danni Dong, M Mark Taketo, Marcus Bosenberg, Yuval Kluger, Keith Choate and 1 more

Abstract read
In one paragraph

Article in Developmental cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed.

  1. Article
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  9. Effects ofAnimals : an open access journal from MDPI · 2025
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  19. TheeLife · 2025
    Article
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20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Khusali GuptaDepartment of Dermatology, Yale University, New Haven, CT 06520, USA; Department of Pathology, Yale University, New Haven, CT 06520, USA.
Jonathan LevinsohnDepartment of Dermatology, Yale University, New Haven, CT 06520, USA; Genetics Department, Yale University, New Haven, CT 06520, USA.
George LindermanApplied Mathematics Program, Yale University, New Haven, CT 06511, USA.
Demeng ChenDepartment of Dermatology, Yale University, New Haven, CT 06520, USA; Department of Pathology, Yale University, New Haven, CT 06520, USA.
Thomas Yang SunGenetics Department, Yale University, New Haven, CT 06520, USA.
Danni DongDepartment of Dermatology, Yale University, New Haven, CT 06520, USA; Department of Pathology, Yale University, New Haven, CT 06520, USA.
M Mark TaketoDivision of Experimental Therapeutics, Graduate School of Medicine, Kyoto University, Yoshida-Konoé-Cho, Sakyo, Kyoto 606-8501, Japan.
Marcus BosenbergDepartment of Dermatology, Yale University, New Haven, CT 06520, USA; Department of Pathology, Yale University, New Haven, CT 06520, USA; Yale Cancer Center, New Haven, CT 06520, USA; Yale Stem Cell Center, New Haven, CT 06520, USA.
Yuval KlugerDepartment of Pathology, Yale University, New Haven, CT 06520, USA; Applied Mathematics Program, Yale University, New Haven, CT 06511, USA.
Keith ChoateDepartment of Dermatology, Yale University, New Haven, CT 06520, USA; Department of Pathology, Yale University, New Haven, CT 06520, USA; Genetics Department, Yale University, New Haven, CT 06520, USA; Yale Cancer Center, New Haven, CT 06520, USA; Yale Stem Cell Center, New Haven, CT 06520, USA.
Peggy MyungDepartment of Dermatology, Yale University, New Haven, CT 06520, USA; Department of Pathology, Yale University, New Haven, CT 06520, USA; Yale Cancer Center, New Haven, CT 06520, USA; Yale Stem Cell Center, New Haven, CT 06520, USA. Electronic address: peggy.myung@yale.edu.

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
Genetics and Pathobiology of Disorders of KeratinizationR01AR068392 · NIAMS · YALE UNIVERSITY · PI KEITH A CHOATE · 2015 to 2026
$5.7M
Genetics and Pathobiology of Cutaneous Mosaic DisordersR01AR071491 · NIAMS · YALE UNIVERSITY · PI KEITH A CHOATE · 2018 to 2026
$4.2M
Delineating spatiotemporal dynamics of hair follicle dermal niche specification at the single-cell levelR01AR076420 · NIAMS · YALE UNIVERSITY · PI MYUNG, PEGGY S · 2020 to 2024
$1.8M
EFFICIENT METHODS FOR CALIBRATION, CLUSTERING, VISUALIZATION AND IMPUTATION OF LARGE scRNA-seq DATAR01GM131642 · NIGMS · YALE UNIVERSITY · PI KLUGER, YUVAL · 2019 to 2022
$1.6M
EFFICIENT SPECTRAL APPROACHES FOR FINDING UNDERLYING STRUCTURES IN BIG DATAR01HG008383 · NHGRI · YALE UNIVERSITY · PI KLUGER, YUVAL · 2016 to 2018
$1.2M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysisS10OD030363 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2022 to 2022
$1.2M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysiS10OD018521 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2015 to 2015
$890k
The Role of Non-Cell Autonomous Wnt Activation in Hair Follicle Growth and CancerK08AR066790 · NIAMS · YALE UNIVERSITY · PI MYUNG, PEGGY S · 2014 to 2018
$674k
Dissecting the Temporal Role of Dermal Wnt/Beta-Catenin Signaling in Hair Follicle Induction During Development and Regenerative Wound HealingR03AR072807 · NIAMS · YALE UNIVERSITY · PI MYUNG, PEGGY S · 2018 to 2019
$168k
NHGRI NIH HHS R01 HG008383NIAMS NIH HHS K08 AR066790NIAMS NIH HHS R01 AR068392NIAMS NIH HHS R01 AR071491NIAMS NIH HHS R01 AR076420NIAMS NIH HHS R03 AR072807NIGMS NIH HHS R01 GM131642NIGMS NIH HHS T32 GM007205NIH HHS S10 OD018521NIH HHS S10 OD030363
6 · The paper itself

Abstract

Delineating molecular and cellular events that precede appendage morphogenesis has been challenging due to the inability to distinguish quantitative molecular differences between cells that lack histological distinction. The hair follicle (HF) dermal condensate (DC) is a cluster of cells critical for HF development and regeneration. Events that presage emergence of this distinctive population are poorly understood. Using unbiased single-cell RNA sequencing and in vivo methods, we infer a sequence of transcriptional states through which DC cells pass that begins prior to HF morphogenesis. Our data indicate that Wnt/β-catenin signaling is required to progress into an intermediate stage that precedes quiescence and differentiation. Further, we provide evidence that quiescent DC cells are recent progeny of selectively proliferating cells present prior to morphogenesis and that are later identified in the peri-DC zone during DC expansion. Together, these findings provide an inferred path of molecular states that lead to DC cell differentiation.

Indexed as

Single-Cell Analysisbeta CateninCell DifferentiationDermisGene Expression Regulation, DevelopmentalHair FollicleMorphogenesisNeurogenesisSkinWnt Signaling Pathwaybeta Catenincell cycledermal condensatedermishair folliclemorphogenesisRNAsingle-cellSox2Wntβ-catenin

Identifiers

PMID30595533
PMCPMC6361530

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.