Evidence map›Paper›PMID 30594394›Full record

ArticleBiochemical and biophysical research communications2019

A developmentally regulated spliced variant of PTBP1 is upregulated in type 1 diabetic hearts.

KarryAnne Belanger, Curtis A Nutter, Jin Li, Peng Yu, Muge N Kuyumcu-Martinez

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

KarryAnne BelangerDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX, 77555, USA.
Curtis A NutterDepartment of Molecular Genetics and Microbiology, Center for NeuroGenetics and the Genetics Institute, College of Medicine, University of Florida, Gainesville, FL, 32610, USA.
Jin LiDepartment of Electrical and Computer Engineering & TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX, 77843, USA.
Peng YuDepartment of Electrical and Computer Engineering & TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX, 77843, USA.
Muge N Kuyumcu-MartinezDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX, 77555, USA; Department of Neuroscience, Cell Biology, and Anatomy, University of Texas Medical Branch, Galveston, TX, 77555, USA; Institute for Translational Sciences, University of Texas Medical Branch, Galveston, TX, 77555, USA. Electronic address: nmmartin@utmb.edu.
Texas A&M University · USThe University of Texas Medical Branch at Galveston · USUniversity of Florida · US

Funding

Role of Rbfox2 in hypoplastic left heart syndromeR01HL135031 · NHLBI · UNIVERSITY OF TEXAS MED BR GALVESTON · PI KUYUMCU-MARTINEZ, MUGE NESLIHAN · 2017 to 2020
$1.5M
NHLBI NIH HHS R01 HL135031
6 · The paper itself

Abstract

Alternative splicing (AS) is dysregulated in Type 1 diabetic (T1D) hearts but mechanisms responsible are unclear. Here, we provide evidence that the RNA binding protein (RBP) PTBP1 is modulated in adult T1D hearts contributing to AS changes. We show that a spliced variant of PTBP1 that is highly expressed in normal newborn mouse hearts is aberrantly expressed in adult T1D mouse hearts. Comparing known PTBP1-target datasets to our T1D mouse transcriptome datasets, we discovered a group of genes with PTBP1 binding sites in their pre-mRNAs that are differentially spliced in T1D mouse hearts. We demonstrated that inducible expression of diabetes-induced PTBP1 spliced variant has less repressive splicing function. Notably, PTBP1 regulates AS of some of its targets antagonistically to RBFOX2. In sum, our results indicate that diabetic conditions disrupt developmental regulation of PTBP1 leading to differential AS of PTBP1 target genes. Identification of PTBP1 and PTBP1-regulated RNA networks can provide RNA-based therapies for the treatment of diabetes cardiac complications.

Indexed as

Alternative SplicingGene Expression Regulation, DevelopmentalAnimalsCELF1 ProteinDiabetes Mellitus, ExperimentalDiabetic CardiomyopathiesGene Expression ProfilingHEK293 CellsHeterogeneous-Nuclear RibonucleoproteinsHumansMiceMice, Inbred NODMyocardiumPolypyrimidine Tract-Binding ProteinProtein BindingRNA Splicing FactorsCELF1 ProteinCELF1 protein, mouseHeterogeneous-Nuclear RibonucleoproteinsPolypyrimidine Tract-Binding ProteinPtbp1 protein, mouseRbfox2 protein, mouseRNA Splicing FactorsStreptozocinAlternative splicingDiabetic heartPTBP1RNA binding proteins

Identifiers

PMID30594394
PMCPMC6330148
OpenAlexW2905746209

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.