Evidence map›Paper›PMID 30593865›Full record

ArticleMethods (San Diego, Calif.)2019

Manipulating the mechanics of extracellular matrix to study effects on the nucleus and its structure.

Yuntao Xia, Sangkyun Cho, Manasvita Vashisth, Irena L Ivanovska, P C Dave P Dingal, Dennis E Discher

Abstract read
In one paragraph

Article in Methods (San Diego, Calif.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yuntao XiaMolecular & Cell Biophysics Lab, University of Pennsylvania, Philadelphia, PA 19104, USA; Physical Sciences Oncology Center at Penn, University of Pennsylvania, Philadelphia, PA 19104, USA.
Sangkyun ChoMolecular & Cell Biophysics Lab, University of Pennsylvania, Philadelphia, PA 19104, USA; Physical Sciences Oncology Center at Penn, University of Pennsylvania, Philadelphia, PA 19104, USA.
Manasvita VashisthMolecular & Cell Biophysics Lab, University of Pennsylvania, Philadelphia, PA 19104, USA; Physical Sciences Oncology Center at Penn, University of Pennsylvania, Philadelphia, PA 19104, USA.
Irena L IvanovskaMolecular & Cell Biophysics Lab, University of Pennsylvania, Philadelphia, PA 19104, USA; Physical Sciences Oncology Center at Penn, University of Pennsylvania, Philadelphia, PA 19104, USA.
P C Dave P DingalMolecular & Cell Biophysics Lab, University of Pennsylvania, Philadelphia, PA 19104, USA; Physical Sciences Oncology Center at Penn, University of Pennsylvania, Philadelphia, PA 19104, USA.
Dennis E DischerMolecular & Cell Biophysics Lab, University of Pennsylvania, Philadelphia, PA 19104, USA; Physical Sciences Oncology Center at Penn, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address: discher@seas.upenn.edu.
Physical Sciences (United States) · US

Funding

PSOC@Penn Education and OutreachU54CA193417 · NCI · UNIVERSITY OF PENNSYLVANIA · PI DISCHER, DENNIS E. · 2015 to 2020
$10.5M
Nanoscience of 'Self' - reductionist approaches to hCD47 inhibition of phagocytesR01HL124106 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI DISCHER, DENNIS E. · 2014 to 2022
$3.1M
Nuclear Mechanics varies with Tissue Mechanics & Regulates CytoskeletonR21HL128187 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI DISCHER, DENNIS E. · 2015 to 2016
$426k
NCI NIH HHS U54 CA193417NHLBI NIH HHS R01 HL124106NHLBI NIH HHS R21 HL128187
6 · The paper itself

Abstract

Tissues such as brain, muscle, and bone differ greatly not only in their biological functions but also in their mechanical properties. Brain is far softer than muscle while bone is the stiffest tissue. Stiffness of extracellular microenvironments affects fundamental cell biological processes such as polarization and DNA replication, which affect nuclear size, shape, and levels of nuclear proteins such as the lamins that modulate gene expression. Reductionist approaches have helped dissect the effects of matrix mechanics away from confounding biochemical signals. Here, we summarize materials and methods for synthesizing and characterizing soft and stiff synthetic hydrogels widely used for mechanobiological studies. Such gels are also easily made to mimic the mechanical heterogeneity of fibrotic tissues. We further describe a nano-thin collagen fiber system, which enables control of anisotropy in addition to stiffness. With the different systems, we illustrate the effects of matrix mechanics on nuclear size, shape, and proteins including the lamins.

Indexed as

Cell BiologyAnisotropyCytological TechniquesExtracellular MatrixGene Expression RegulationHydrogelsMechanical PhenomenaHydrogels

Identifiers

PMID30593865
PMCPMC6508970
OpenAlexW2905674607

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.