Evidence map›Paper›PMID 30593255›Full record

ArticleRNA biology2019

Trypanosoma brucei RRP44 is involved in an early stage of large ribosomal subunit RNA maturation.

Giovanna Cesaro, Flávia Raquel Gonçalves Carneiro, Andréa Rodrigues Ávila, Nilson Ivo Tonin Zanchin, Beatriz Gomes Guimarães

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. tRNARNA (New York, N.Y.) · 2023
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Giovanna Cesaroa Carlos Chagas Institute , Oswaldo Cruz Foundation, FIOCRUZ-PR , Curitiba , Brazil.ORCID 0000-0003-0542-7831
Flávia Raquel Gonçalves Carneiroa Carlos Chagas Institute , Oswaldo Cruz Foundation, FIOCRUZ-PR , Curitiba , Brazil.
Andréa Rodrigues Ávilaa Carlos Chagas Institute , Oswaldo Cruz Foundation, FIOCRUZ-PR , Curitiba , Brazil.
Nilson Ivo Tonin Zanchina Carlos Chagas Institute , Oswaldo Cruz Foundation, FIOCRUZ-PR , Curitiba , Brazil.ORCID 0000-0002-1153-0694
Beatriz Gomes Guimarãesa Carlos Chagas Institute , Oswaldo Cruz Foundation, FIOCRUZ-PR , Curitiba , Brazil.ORCID 0000-0002-8546-2460
Fundação Carlos Chagas · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribosomal RNA precursors undergo a series of structural and chemical modifications to generate matured RNA molecules that will comprise ribosomes. This maturation process involves a large set of accessory proteins as well as ribonucleases, responsible for removal of the external and internal transcribed spacers from the pre-rRNA. Early-diverging eukaryotes belonging to the Kinetoplastida class display several unique characteristics, in particular in terms of RNA synthesis and maturation. These peculiarities include the rRNA biogenesis and the extensive fragmentation of the large ribosomal subunit (LSU) rRNA. The role of specific endo- and exonucleases in the maturation of the unusual rRNA precursor of trypanosomatids remains largely unknown. One of the nucleases involved in rRNA processing is Rrp44, an exosome associated ribonuclease in yeast, which is involved in several metabolic RNA pathways. Here, we investigated the function of Trypanosoma brucei RRP44 orthologue (TbRRP44) in rRNA processing. Our results revealed that TbRRP44 depletion causes unusual polysome profile and accumulation of the complete LSU rRNA precursor, in addition to 5.8S maturation impairment. We also determined the crystal structure of TbRRP44 endonucleolytic domain. Structural comparison with Saccharomyces cerevisiae Rrp44 revealed differences in the catalytic site and substitutions of surface residues, which could provide molecular bases for the lack of interaction of RRP44 with the exosome complex in T. brucei.

Indexed as

RNA Processing, Post-TranscriptionalAnimalsCattleCells, CulturedExosome Multienzyme Ribonuclease ComplexHost-Parasite InteractionsModels, MolecularProtein BindingProtein ConformationProtozoan ProteinsRNA, RibosomalStructure-Activity RelationshipTrypanosoma brucei bruceiTrypanosomiasis, BovineExosome Multienzyme Ribonuclease ComplexProtozoan ProteinsRNA, RibosomalPIN domain 3D structureribonucleaserRNA processingRRP44

Identifiers

PMID30593255
PMCPMC6380303
OpenAlexW2908111277

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.