Evidence map›Paper›PMID 30592103›Full record

ArticleProtein science : a publication of the Protein Society2019

Crystallographic identification of spontaneous oxidation intermediates and products of protein sulfhydryl groups.

Jimin Wang

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Recognizing lysine-cysteine crosslinks in proteins.Protein science : a publication of the Protein Society · 2021
    Article
  6. Article
  7. The Structural Biology of Septins and Their Filaments: An Update.Frontiers in cell and developmental biology · 2021
    Review
  8. Crystal structure of the C-terminal domain of DENR.Computational and structural biotechnology journal · 2020
    Article
  9. Comment on Wang's paper on the covalent Cys-X-Lys bridges.Protein science : a publication of the Protein Society · 2019
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Jimin WangDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, 06520.ORCID 0000-0002-4504-8038
Yale University · US

Funding

X-RAY ANALYSIS OF PROTEIN STRUCTURE AND FUNCTIONP01GM022778 · NIGMS · YALE UNIVERSITY · PI BREAKER, RONALD R · 1985 to 2019
$26.1M
NIGMS NIH HHS P01 GM022778NIH HHS P01 GM022778
6 · The paper itself

Abstract

In the absence of protective reducing agents, Cys residues in purified proteins can be oxidized spontaneously by oxygen in the air, as frequently observed in protein crystal structures. However, the formation of an O-bridge via dehydration mechanism between a peroxidized Cys side chain and a primary amine of Lys side chain in proteins has not yet been reported. When an electron density feature was observed for an extra group or an extra atom between side chains of Cys-245 and Lys-158 in the crystal structure of histidinol phosphate phosphatase, mass spectrometric analysis was carried out for its chemical identification. That analysis led to a conclusion that this extra density corresponded to a methylene group. It was then proposed that these two residues were able to absorb CO

Indexed as

CysteineHistidinol-PhosphataseLysineMedicago truncatulaModels, MolecularOxidation-ReductionPlant ProteinsProtein ConformationSulfhydryl CompoundsThermodynamicsCysteineHistidinol-PhosphataseLysinePlant ProteinsSulfhydryl Compoundsbond energycarbon fixationeigenvectorsN-oxideoximesphotosynthesisredox reactionstandard free energy changesulfenic acidthermodynamics

Identifiers

PMID30592103
PMCPMC6371210
OpenAlexW2907881914

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.