Evidence map›Paper›PMID 30591675›Full record

ArticleInternational journal of molecular sciences2018

Functional Polymorphisms in DNA Repair Genes Are Associated with Sporadic Colorectal Cancer Susceptibility and Clinical Outcome.

Katerina Jiraskova, David J Hughes, Stefanie Brezina, Tanja Gumpenberger, Veronika Veskrnova, Tomas Buchler, Michaela Schneiderova, Miroslav Levy, Vaclav Liska, Sona Vodenkova and 6 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. Research progress on the role of the NEIL family in cancer.Frontiers in cell and developmental biology · 2025
    Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Experimental and therapeutic medicine · 2021
    Article
  7. Article
  8. Rare Variants in the DNA Repair Pathway and the Risk of Colorectal Cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2021
    Article
  9. Article
  10. Polymorphisms in the Angiogenesis-Related GenesInternational journal of molecular sciences · 2020
    Article
  11. Review
  12. Review
  13. Special Issue on Basic and Translational Research in Colorectal Cancer.International journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 4 countries.

Katerina JiraskovaInstitute of Biology and Medical Genetics, First Faculty of Medicine, Charles University, Albertov 4, 128 00 Prague, Czech Republic. katerina.jiraskova@iem.cas.cz.ORCID 0000-0001-8462-6358
David J HughesCancer Biology and Therapeutics Group, UCD Conway Institute, University College Dublin, Dublin 4, Ireland. davidhughes@rcsi.ie.
Stefanie BrezinaInstitute of Cancer Research, Department of Medicine I, Medical University of Vienna, Borschkegasse 8a, A-1090 Vienna, Austria. stefanie.brezina@meduniwien.ac.at.
Tanja GumpenbergerInstitute of Cancer Research, Department of Medicine I, Medical University of Vienna, Borschkegasse 8a, A-1090 Vienna, Austria. tanja.gumpenberger@meduniwien.ac.at.ORCID 0000-0001-9319-5350
Veronika VeskrnovaDepartment of Oncology, First Faculty of Medicine, Charles University and Thomayer Hospital, Videnska 800, 140 59 Prague, Czech Republic. veskrnova.ver@gmail.com.
Tomas BuchlerDepartment of Oncology, First Faculty of Medicine, Charles University and Thomayer Hospital, Videnska 800, 140 59 Prague, Czech Republic. buchlert@yahoo.com.ORCID 0000-0001-6667-994X
Michaela SchneiderovaDepartment of Surgery, General University Hospital in Prague, U Nemocnice 499/2, 128 08 Prague, Czech Republic. schneider77@seznam.cz.
Miroslav LevyDepartment of Surgery, First Faculty of Medicine, Charles University and Thomayer Hospital, Thomayerova 815/5, 140 00 Prague, Czech Republic. miroslav.levy@lf1.cuni.cz.
Vaclav LiskaBiomedical Centre, Faculty of Medicine in Pilsen, Charles University in Prague, 323 00 Pilsen, Czech Republic. vena.liska@skaut.cz.
Sona VodenkovaInstitute of Biology and Medical Genetics, First Faculty of Medicine, Charles University, Albertov 4, 128 00 Prague, Czech Republic. sona.vodenkova@iem.cas.cz.
Cornelia Di GaetanoMolecular and Genetic Epidemiology; Genomic Variation in Human Populations and Complex Diseases, IIGM Italian Institute for Genomic Medicine, Via Nizza 52, 10126 Turin, Italy. cdigaeta@unito.it.
Alessio NaccaratiDepartment of Molecular Biology of Cancer, Institute of Experimental Medicine of the Czech Academy of Sciences, Videnska 1083, 142 00 Prague, Czech Republic. alessio.naccarati@iigm.it.
Barbara PardiniMolecular and Genetic Epidemiology; Genomic Variation in Human Populations and Complex Diseases, IIGM Italian Institute for Genomic Medicine, Via Nizza 52, 10126 Turin, Italy. barbara.pardini@iigm.it.
Veronika VymetalkovaInstitute of Biology and Medical Genetics, First Faculty of Medicine, Charles University, Albertov 4, 128 00 Prague, Czech Republic. veronika.vymetalkova@iem.cas.cz.ORCID 0000-0001-6870-6788
Andrea GsurInstitute of Cancer Research, Department of Medicine I, Medical University of Vienna, Borschkegasse 8a, A-1090 Vienna, Austria. andrea.gsur@meduniwien.ac.at.
Pavel VodickaInstitute of Biology and Medical Genetics, First Faculty of Medicine, Charles University, Albertov 4, 128 00 Prague, Czech Republic. pavel.vodicka@iem.cas.cz.
Charles University · CZItalian institute for Genomic Medicine · ITMedical University of Vienna · ATGeneral University Hospital in Prague · CZUniversity College Dublin · IE

Funding

Grantová Agentura České Republiky GACR 15-14789SGrantová Agentura České Republiky GACR 17-16857SMinistry of Education Youth and Sports of the Czech Republic, the National Sustainability Program I LO1503the Centrum of clinical and experimental liver surgery UNCE/MED/006the FFG BRIDGE 829675the Fondazione Umberto Veronesi Post-doctoral fellowship Year 2014-2017the Grant Agency of Charles University GAUK112515the Health Research Board of Ireland HRA_PHS/2015/1142the Herzfelder´sche Familienstiftung the Herzfelder´sche Familienstiftungthe Internal Grant Agency of the Ministry of Health of the Czech Republic AZV 17-30920Athe Internal Grant Agency of the Ministry of Health of the Czech Republic AZV MZ 15-26535A
6 · The paper itself

Abstract

DNA repair processes are involved in both the onset and treatment efficacy of colorectal cancer (CRC). A change of a single nucleotide causing an amino acid substitution in the corresponding protein may alter the efficiency of DNA repair, thus modifying the CRC susceptibility and clinical outcome. We performed a candidate gene approach in order to analyze the association of non-synonymous single nucleotide polymorphisms (nsSNPs) in the genes covering the main DNA repair pathways with CRC risk and clinical outcome modifications. Our candidate polymorphisms were selected according to the foremost genomic and functional prediction databases. Sixteen nsSNPs in 12 DNA repair genes were evaluated in cohorts from the Czech Republic and Austria. Apart from the tumor-node-metastasis (TNM) stage, which occurred as the main prognostic factor in all of the performed analyses, we observed several significant associations of different nsSNPs with survival and clinical outcomes in both cohorts. However, only some of the genes (

Indexed as

AdultAgedAustriaCohort StudiesColorectal NeoplasmsCzech RepublicDisease-Free SurvivalDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA Polymerase thetaDNA RepairFemaleGenetic Predisposition to DiseaseHumansMaleMiddle AgedDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA Polymerase thetaNEIL3 protein, humanN-Glycosyl HydrolasesREV3L protein, humancolorectal cancer susceptibilityDNA repair genesfunctional single nucleotide polymorphismsurvival analysis

Identifiers

PMID30591675
PMCPMC6337670
OpenAlexW2906204722

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.