Evidence map›Paper›PMID 30590583›Full record

ArticleThe Journal of antimicrobial chemotherapy2019

A mecC allotype, mecC3, in the CoNS Staphylococcus caeli, encoded within a variant SCCmecC.

A C MacFadyen, E M Harrison, I Drigo, J Parkhill, M A Holmes, G K Paterson

Open access · greenAbstract read
In one paragraph

Article in The Journal of antimicrobial chemotherapy, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Molecular Epidemiology ofAntibiotics (Basel, Switzerland) · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

A C MacFadyenRoyal (Dick) School of Veterinary Studies and The Roslin Institute, University of Edinburgh, Easter Bush Campus, Midlothian, UK.
E M HarrisonThe Wellcome Trust Sanger Institute, Wellcome Trust, Genome Campus, Hinxton, UK.
I DrigoIstituto Zooprofilattico Sperimentale delle Venezie, via dell'Università 10, Legnaro, PD, Italy.
J ParkhillThe Wellcome Trust Sanger Institute, Wellcome Trust, Genome Campus, Hinxton, UK.
M A HolmesDepartment of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge, UK.
G K PatersonRoyal (Dick) School of Veterinary Studies and The Roslin Institute, University of Edinburgh, Easter Bush Campus, Midlothian, UK.
Roslin Institute · GBWellcome Sanger Institute · GBIstituto Zooprofilattico Sperimentale delle Venezie · ITUniversity of Cambridge · GB

Funding

Medical Research Council G1001787Medical Research Council G1001787/1Medical Research Council MR/P007201/1Medical Research Council MR/S00291X/1Wellcome TrustWellcome Trust 098051
6 · The paper itself

Abstract

backgroundMethicillin resistance in staphylococci is conferred by an alternative PBP (PBP2a/2') with low affinity for most β-lactam antibiotics. PBP2a is encoded by mecA, which is carried on a mobile genetic element known as SCCmec. A variant of mecA, mecC, was described in 2011 and has been found in Staphylococcus aureus from humans and a wide range of animal species as well as a small number of other staphylococcal species from animals.

objectivesWe characterized a novel mecC allotype, mecC3, encoded by an environmental isolate of Staphylococcus caeli cultured from air sampling of a commercial rabbit holding.

methodsThe S. caeli isolate 82BT was collected in Italy in 2013 and genome sequenced using MiSeq technology. This allowed the assembly and comparative genomic study of the novel SCCmec region encoding mecC3.

resultsThe study isolate encodes a novel mecA allotype, mecC3, with 92% nucleotide identity to mecC. mecC3 is encoded within a novel SCCmec element distinct from those previously associated with mecC, including a ccrAB pairing (ccrA5B3) not previously linked to mecC.

conclusionsThis is the first description of the novel mecC allotype mecC3, the first isolation of a mecC-positive Staphylococcus in Italy and the first report of mecC in S. caeli. Furthermore, the SCCmec element described here is highly dissimilar to the archetypal SCCmec XI encoding mecC in S. aureus and to elements encoding mecC in other staphylococci. Our report highlights the diversity of mecC allotypes and the diverse staphylococcal species, ecological settings and genomic context in which mecC may be found.

Indexed as

Air MicrobiologyGenes, BacterialMethicillin ResistanceAllelesAnimalsGenotypeItalyPenicillin-Binding ProteinsRabbitsSequence Homology, Nucleic AcidStaphylococcusWhole Genome SequencingPenicillin-Binding Proteins

Identifiers

PMID30590583
PMCPMC6484881
OpenAlexW2906505801

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.