Evidence map›Paper›PMID 30590252›Full record

ArticleiScience2019

A FACS-Based Genome-wide CRISPR Screen Reveals a Requirement for COPI in Chlamydia trachomatis Invasion.

Joseph S Park, Jennifer D Helble, Jacob E Lazarus, Guanhua Yang, Carlos J Blondel, John G Doench, Michael N Starnbach, Matthew K Waldor

Open access · goldAbstract read
In one paragraph

Article in iScience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Type III Secretion inMicrobiology and molecular biology reviews : MMBR · 2023
    Review
  9. Article
  10. Article
  11. Adding a Chemical Biology Twist to CRISPR Screening.Israel journal of chemistry · 2023
    Article
  12. Advances in genetic manipulation ofFrontiers in immunology · 2023
    Review
  13. Article
  14. Article
  15. A new era in functional genomics screens.Nature reviews. Genetics · 2022
    Review
  16. The Small Molecule H89 InhibitsInfection and immunity · 2021
    Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Joseph S ParkHoward Hughes Medical Institute, Boston, MA 02215, USA; Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA; Division of Infectious Diseases, Brigham & Women's Hospital, Boston 02115, MA, USA; Boston University School of Medicine, Boston, MA 02120, USA.
Jennifer D HelbleDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA.
Jacob E LazarusDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA; Division of Infectious Diseases, Brigham & Women's Hospital, Boston 02115, MA, USA; Division of Infectious Diseases, Massachusetts General Hospital, Boston, MA 02114, USA.
Guanhua YangDivision of Infectious Diseases, Brigham & Women's Hospital, Boston 02115, MA, USA.
Carlos J BlondelDivision of Infectious Diseases, Brigham & Women's Hospital, Boston 02115, MA, USA.
John G DoenchBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Michael N StarnbachDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA.
Matthew K WaldorHoward Hughes Medical Institute, Boston, MA 02215, USA; Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA; Division of Infectious Diseases, Brigham & Women's Hospital, Boston 02115, MA, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA. Electronic address: mwaldor@research.bwh.harvard.edu.
Harvard University · USBrigham and Women's Hospital · USHoward Hughes Medical Institute · USBroad Institute · US

Funding

Cytotoxic T Cell Mediated Immunity to ChlamydiaR01AI039558 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI STARNBACH, MICHAEL N · 2001 to 2025
$15.6M
The EPI-STI Biostatistics and Bioinformatics Core (Cuzick/Wheeler)U19AI113187 · NIAID · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI WHEELER, COSETTE MARIE · 2014 to 2018
$12.6M
INFECTIOUS DISEASE AND BASIC MICROBIOLOGICAL MECHANISMST32AI007061 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Marcia B Goldberg · 1985 to 2026
$12.1M
Vibrio cholerae intestinal colonization and vaccine developmentR01AI042347 · NIAID · TUFTS UNIVERSITY BOSTON · PI WALDOR, MATTHEW K · 1998 to 2025
$7.3M
Molecular Biology and Virulence of CTX PhageR37AI042347 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI WALDOR, MATTHEW K · 2008 to 2017
$3.8M
Genetics of Host Resistance to Chlamydia trachomatisR01AI062827 · NIAID · HARVARD MEDICAL SCHOOL · PI STARNBACH, MICHAEL N · 2006 to 2014
$3.8M
CYTOTOXIC T CELL MEDIATED IMMUNITY TO CHLAMYDIAR29AI039558 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI STARNBACH, MICHAEL N · 1996 to 2000
$135k
NIAID NIH HHS R01 AI039558NIAID NIH HHS R01 AI042347NIAID NIH HHS R01 AI062827NIAID NIH HHS R29 AI039558NIAID NIH HHS R37 AI042347NIAID NIH HHS T32 AI007061NIAID NIH HHS U19 AI113187
6 · The paper itself

Abstract

The invasion of Chlamydia trachomatis, an obligate intracellular bacterium, into epithelial cells is driven by a complex interplay of host and bacterial factors. To comprehensively define the host genes required for pathogen invasion, we undertook a fluorescence-activated cell sorting (FACS)-based CRISPR screen in human cells. A genome-wide loss-of-function library was infected with fluorescent C. trachomatis and then sorted to enrich for invasion-deficient mutants. The screen identified heparan sulfate, a known pathogen receptor, as well as coatomer complex I (COPI). We found that COPI, through a previously unappreciated role, promotes heparan sulfate cell surface presentation, thereby facilitating C. trachomatis attachment. The heparan sulfate defect does not fully account for the resistance of COPI mutants. COPI also promotes the activity of the pathogen's type III secretion system. Together, our findings establish the requirement for COPI in C. trachomatis invasion and the utility of FACS-based CRISPR screening for the elucidation of host factors required for pathogen invasion.

Indexed as

Cell BiologyGenetic EngineeringGenetic ScreensHost-pathogen InteractionsMedical MicrobiologyMethodology in Biological SciencesMolecular Mechanism of BehaviorMolecular Microbiology

Identifiers

PMID30590252
PMCPMC6308251
OpenAlexW2905245142

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.