Evidence map›Paper›PMID 30590126›Full record

ArticleThe Journal of molecular diagnostics : JMD2019

Establishment of Immunoglobulin Heavy (IGH) Chain Clonality Testing by Next-Generation Sequencing for Routine Characterization of B-Cell and Plasma Cell Neoplasms.

Maria E Arcila, Wayne Yu, Mustafa Syed, Hannah Kim, Lidia Maciag, JinJuan Yao, Caleb Ho, Kseniya Petrova, Christine Moung, Paulo Salazar and 8 more

Abstract read
In one paragraph

Article in The Journal of molecular diagnostics : JMD, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 83 citations in OpenAlex.

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  16. [Minimal residual disease assessment and progress in multiple myeloma].Zhonghua xue ye xue za zhi = Zhonghua xueyexue zazhi · 2024
    Article
  17. Diagnostic and prognostic molecular pathology of lymphoid malignancies.Virchows Archiv : an international journal of pathology · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 1 institution in 1 country.

Maria E ArcilaDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York. Electronic address: arcilam@mskcc.org.
Wayne YuDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Mustafa SyedDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Hannah KimDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Lidia MaciagDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
JinJuan YaoDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Caleb HoDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Kseniya PetrovaDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Christine MoungDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Paulo SalazarDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Ivelise RijoDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Tessara BaldiDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Ahmet ZehirDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Ola LandgrenDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Jae ParkDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Mikhail RoshalDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Ahmet DoganDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Khedoudja NafaDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Memorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

Immunoglobulin heavy chain (IGH) clonality testing by next-generation sequencing (NGS) offers unique advantages over current low-throughput methods in the assessment of B-cell lineage neoplasms. Clinical use remains limited because assays are not standardized and validation/implementation guidelines are not yet developed. Herein, we describe our clinical validation and implementation of NGS IGH clonality testing and summarize our experience based on extensive routine use. NGS-based clonality testing targeting IGH FR1, FR2, FR3, and the conserved leader sequence upstream of FR1 was validated using commercially available kits. Data were analyzed by commercial and in-house-developed bioinformatics pipelines. Performance characteristics were evaluated directly comparing with capillary electrophoresis (CE) assays (BIOMED-2 primers). Assays were monitored after implementation (>1.5 years), concurrently testing by CE methods. A total of 1189 clinical samples were studied (94 validation, 1095 postimplementation). NGS showed superior performance compared with CE assays. For initial assessment, clonality detection rate was >97% for all malignancy types. Concordance with CE was 96%; discordances were related to higher sensitivity/resolution of NGS and improved detection in cases with high somatic hypermutation. Routine NGS clonality assessment is feasible and superior to existing assays, enabling accurate and specific index clone assessment and future tracking of all rearrangements in a patient sample. Successful implementation requires new standardization, validation, and implementation processes, which should be performed as a multicenter and multidisciplinary collaboration.

Indexed as

B-LymphocytesElectrophoresis, CapillaryHigh-Throughput Nucleotide SequencingHumansImmunoglobulin Heavy ChainsNeoplasms, Plasma CellImmunoglobulin Heavy Chains

Identifiers

PMID30590126
PMCPMC6436112
OpenAlexW2906051201

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.