Evidence map›Paper›PMID 30589412›Full record

ArticleeLife2018

Dynamic multifactor hubs interact transiently with sites of active transcription in

Mustafa Mir, Michael R Stadler, Stephan A Ortiz, Colleen E Hannon, Melissa M Harrison, Xavier Darzacq, Michael B Eisen

Abstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 139 papers.

0numbers the graph read from it
0cells of the map it votes in
139citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

139 citing papers in PubMed.

  1. Article
  2. Review
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  6. Review
  7. Article
  8. Invariant nonequilibrium dynamics in gene regulation optimize information flow.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  12. Article
  13. Review
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  15. Article
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79 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mustafa Mir *Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0001-8280-2821
Michael R Stadler *Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0002-3333-4184
Stephan A OrtizDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.
Colleen E HannonDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0002-4402-8107
Melissa M HarrisonDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, United States.ORCID 0000-0002-8228-6836
Xavier DarzacqDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0003-2537-8395
Michael B EisenDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0002-7528-738X

Funding

Center for 3D Structure and Physics of the GenomeU54DK107980 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI DEKKER, JOB, MIRNY, LEONID A · 2015 to 2019
$14.9M
Tools For Imaging the Functional Genome in Living Cells and TissuesU01EB021236 · NIBIB · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DARZACQ, XAVIER, SINGER, ROBERT H · 2015 to 2017
$2.5M
Tools For Imaging the Functional Genome in Living Cells and TissuesU01DA047729 · NIDA · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DARZACQ, XAVIER, SINGER, ROBERT H · 2018 to 2019
$1.7M
Mechanisms of genomic reprogramming and transcriptional activation in the embryoR01GM111694 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HARRISON, MELISSA · 2015 to 2019
$1.6M
Howard Hughes Medical InstituteNIBIB NIH HHS U01 EB021236NIDA NIH HHS U01 DA047729NIDDK NIH HHS U54 DK107980NIGMS NIH HHS R01 GM111694NIH HHS GM111694NIH HHS U54-DK107980NIH HHS UO1-EB021236
6 · The paper itself

Abstract

The regulation of transcription requires the coordination of numerous activities on DNA, yet how transcription factors mediate these activities remains poorly understood. Here, we use lattice light-sheet microscopy to integrate single-molecule and high-speed 4D imaging in developing Editorial note: This article has been through an editorial process in which the authors decide how to respond to the issues raised during peer review. The Reviewing Editor's assessment is that all the issues have been addressed (see decision letter).

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBinding SitesCell NucleusDrosophila melanogasterDrosophila ProteinsEmbryo, NonmammalianHomeodomain ProteinsImaging, Three-DimensionalMicroscopy, ConfocalNuclear ProteinsProtein BindingTime-Lapse ImagingTrans-ActivatorsTranscription Factorsbcd protein, DrosophilaDrosophila ProteinsHomeodomain ProteinsNuclear ProteinsTrans-ActivatorsTranscription Factorszld protein, Drosophilabicoidchromosomesdevelopmental biologyD. melanogastergene expressionmembraneless compartmentsms2single molecule imagingtranscription regulationzelda

Identifiers

PMID30589412
PMCPMC6307861

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.