Evidence map›Paper›PMID 30586460›Full record

ArticlePloS one2018

Population structures of the water-borne plant pathogen Phytopythium helicoides reveal its possible origins and transmission modes in Japan.

Auliana Afandi, Emi Murayama, Yin-Ling, Ayaka Hieno, Haruhisa Suga, Koji Kageyama

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Population Genetic Analysis ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  3. Characterization ofMicroorganisms · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Auliana AfandiThe United Graduate School of Agricultural Science, Gifu University, Gifu, Japan.ORCID 0000-0002-8995-2627
Emi MurayamaRiver Basin Research Center, Gifu University, Gifu, Japan.
Yin-LingInner Mongolia University for Nationalities, Tongliao, China.
Ayaka HienoRiver Basin Research Center, Gifu University, Gifu, Japan.ORCID 0000-0001-5019-2336
Haruhisa SugaLife Science Research Center, Gifu University, Gifu, Japan.
Koji KageyamaRiver Basin Research Center, Gifu University, Gifu, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The purpose of this study was to clarify the genetic diversity of Phytopythium helicoides and to understand the transmission mode of the pathogen in Japan. In total, 232 P. helicoides isolates were collected from various host plants and geographic origins, including farms and natural environments. We developed 6 novel microsatellite markers for use in the study and found 90 alleles among the 6 markers in the 232 isolates. The analysis of molecular variance suggested that P. helicoides has high variance within individuals and low fixation indices between populations. A phylogenetic analysis revealed that isolates collected from the same hosts and/or geographic origins were often grouped together. For example, several isolates from natural environments were grouped with isolates from nearby agricultural areas. On the other hand, 2 geographically distant populations collected from the same host plant had similar genotypes. Our results suggested that migration of the pathogen could be facilitated naturally via drainage systems or by human activity in the transport of agricultural materials.

Indexed as

Genetics, PopulationAllelesGenetic VariationGenotypeJapanMicrosatellite RepeatsOomycetesPhylogenyPlant DiseasesPlant RootsPlants

Identifiers

PMID30586460
PMCPMC6306214

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.