Evidence map›Paper›PMID 30585624›Full record

Trial reportClinical and experimental immunology2019

Bronchoalveolar lavage characteristics correlate with HLA tag SNPs in patients with Löfgren's syndrome and other sarcoidosis.

B Karakaya, M C Schimmelpennink, L Kocourkova, J J van der Vis, B Meek, J C Grutters, M Petrek, C H M van Moorsel

Open access · bronzeAbstract readClinical TrialMulticenter Study
In one paragraph

Trial report in Clinical and experimental immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Cytokine gene polymorphisms in Pigeon Breeder's Disease expression.Sarcoidosis, vasculitis, and diffuse lung diseases : official journal of WASOG · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

B KarakayaDepartment of Pulmonology, ILD Center of Excellence, St Antonius Hospital, Nieuwegein, the Netherlands.
M C SchimmelpenninkDepartment of Pulmonology, ILD Center of Excellence, St Antonius Hospital, Nieuwegein, the Netherlands.ORCID 0000-0003-3222-1644
L KocourkovaDepartment of Pathological Physiology, Faculty of Medicine and Dentistry, Palacky University Olomouc, Czech Republic.
J J van der VisDepartment of Pulmonology, ILD Center of Excellence, St Antonius Hospital, Nieuwegein, the Netherlands.
B MeekMedical Immunology and Microbiology Department, St Antonius Hospital, Nieuwegein, the Netherlands.
J C GruttersDepartment of Pulmonology, ILD Center of Excellence, St Antonius Hospital, Nieuwegein, the Netherlands.
M PetrekDepartment of Pathological Physiology, Faculty of Medicine and Dentistry, Palacky University Olomouc, Czech Republic.
C H M van MoorselDepartment of Pulmonology, ILD Center of Excellence, St Antonius Hospital, Nieuwegein, the Netherlands.
St. Antonius Ziekenhuis · NLPalacký University Olomouc · CZUniversity Medical Center Utrecht · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetic susceptibility for sarcoidosis and Löfgren's syndrome (LS) has been associated with prognosis. Human leukocyte antigen (HLA)-DRB1*03 is over-represented in LS, and is associated with a good prognosis, whereas HLA-DRB1*15-positive patients have a more chronic course of sarcoidosis. These HLA-DRB1 types can be easily tagged by single nucleotide polymorphisms (SNPs). Our aim was to evaluate the association between these tag SNPs and bronchoalveolar lavage (BAL) characteristics. In 29 patients, both complete HLA-DRB1* locus genotyping and SNP tagging was performed in parallel. HLA-DRB1 type was inferred from the presence of *03 tag rs2040410 allele A and referred to as *03. HLA-DRB1*15 was inferred from the presence of tag SNP rs3135388 allele A and referred to as *15. For BAL analysis, 122 patients with LS and 165 patients with non-LS sarcoidosis were included. BAL lymphocyte subsets were analyzed by flow cytometry. The presence of tag SNPs completely corresponded with HLA-DRB1*03/*15 genotypes in all 29 patients in whom both HLA-DRB1* genotyping and SNP tagging was performed. In all patients together, *03

Indexed as

AllelesCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesHLA-DRB1 ChainsPolymorphism, Single NucleotideSarcoidosis, PulmonaryAdultBronchoalveolar LavageGenotyping TechniquesHumansMaleMiddle AgedHLA-DRB1*15 antigenHLA-DRB1 ChainslungMHCT cells

Identifiers

PMID30585624
PMCPMC6468184
OpenAlexW2906527351

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.