Evidence map›Paper›PMID 30584090›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Mutational landscape of primary, metastatic, and recurrent ovarian cancer reveals c-MYC gains as potential target for BET inhibitors.

Charles Li, Elena Bonazzoli, Stefania Bellone, Jungmin Choi, Weilai Dong, Gulden Menderes, Gary Altwerger, Chanhee Han, Aranzazu Manzano, Anna Bianchi and 29 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it, 99 citations in OpenAlex.

  1. Summary ofGenes · 2020
    Pooled it
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  3. Review
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  5. Article
  6. Functional validation of somatic variability inCancer biology & therapy · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

39 authors at 2 institutions in 2 countries.

Charles LiDepartment of Genetics, Yale School of Medicine, New Haven, CT 06510.
Elena BonazzoliDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Stefania BelloneDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Jungmin ChoiDepartment of Genetics, Yale School of Medicine, New Haven, CT 06510.
Weilai DongDepartment of Genetics, Yale School of Medicine, New Haven, CT 06510.
Gulden MenderesDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Gary AltwergerDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Chanhee HanDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Aranzazu ManzanoDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Anna BianchiDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Francesca PettinellaDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Paola ManaraDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Salvatore LopezDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Ghanshyam YadavDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Francesco RiccioDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Luca ZammataroDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Burak ZeybekDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Yang Yang-HartwichDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Natalia BuzaDepartment of Pathology, Yale School of Medicine, New Haven, CT 06510.
Pei HuiDepartment of Pathology, Yale School of Medicine, New Haven, CT 06510.
Serena WongDepartment of Pathology, Yale School of Medicine, New Haven, CT 06510.
Antonella RavaggiDepartment of Obstetrics & Gynecology, Angelo Nocivelli Institute of Molecular Medicine, University of Brescia, 25100 Brescia, Italy.ORCID 0000-0003-4661-9979
Eliana BignottiDepartment of Obstetrics & Gynecology, Angelo Nocivelli Institute of Molecular Medicine, University of Brescia, 25100 Brescia, Italy.ORCID 0000-0001-6380-6181
Chiara RomaniDepartment of Obstetrics & Gynecology, Angelo Nocivelli Institute of Molecular Medicine, University of Brescia, 25100 Brescia, Italy.
Paola TodeschiniDepartment of Obstetrics & Gynecology, Angelo Nocivelli Institute of Molecular Medicine, University of Brescia, 25100 Brescia, Italy.
Laura ZanottiDepartment of Obstetrics & Gynecology, Angelo Nocivelli Institute of Molecular Medicine, University of Brescia, 25100 Brescia, Italy.
Valentina ZizioliDepartment of Obstetrics & Gynecology, Angelo Nocivelli Institute of Molecular Medicine, University of Brescia, 25100 Brescia, Italy.
Franco OdicinoDepartment of Obstetrics & Gynecology, Angelo Nocivelli Institute of Molecular Medicine, University of Brescia, 25100 Brescia, Italy.
Sergio PecorelliDepartment of Obstetrics & Gynecology, Angelo Nocivelli Institute of Molecular Medicine, University of Brescia, 25100 Brescia, Italy.
Laura ArdighieriDepartment of Pathology, University of Brescia, 25100 Brescia, Italy.
Dan-Arin SilasiDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Babak LitkouhiDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Elena RatnerDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Masoud AzodiDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Gloria S HuangDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Peter E SchwartzDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Richard P LiftonDepartment of Genetics, Yale School of Medicine, New Haven, CT 06510.
Joseph SchlessingerDepartment of Pharmacology, Yale School of Medicine, New Haven, CT 06510 joseph.schlessinger@yale.edu.
Alessandro D SantinDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale School of Medicine, New Haven, CT 06510.
Yale University · USUniversity of Brescia · IT

Funding

Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI DAVID L RIMM · 1985 to 2026
$85.0M
Integrated genomic analysis of racial disparities in endometrial cancerU01CA176067 · NCI · YALE UNIVERSITY · PI SANTIN, ALESSANDRO D · 2014 to 2018
$1.7M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysisS10OD030363 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2022 to 2022
$1.2M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysiS10OD018521 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2015 to 2015
$890k
NCI NIH HHS P30 CA016359NCI NIH HHS U01 CA176067NIH HHS S10 OD018521NIH HHS S10 OD030363
6 · The paper itself

Abstract

Ovarian cancer remains the most lethal gynecologic malignancy. We analyzed the mutational landscape of 64 primary, 41 metastatic, and 17 recurrent fresh-frozen tumors from 77 patients along with matched normal DNA, by whole-exome sequencing (WES). We also sequenced 13 pairs of synchronous bilateral ovarian cancer (SBOC) to evaluate the evolutionary history. Lastly, to search for therapeutic targets, we evaluated the activity of the Bromodomain and Extra-Terminal motif (BET) inhibitor GS-626510 on primary tumors and xenografts harboring c-MYC amplifications. In line with previous studies, the large majority of germline and somatic mutations were found in BRCA1/2 (21%) and TP53 (86%) genes, respectively. Among mutations in known cancer driver genes, 77% were transmitted from primary tumors to metastatic tumors, and 80% from primary to recurrent tumors, indicating that driver mutations are commonly retained during ovarian cancer evolution. Importantly, the number, mutation spectra, and signatures in matched primary-metastatic tumors were extremely similar, suggesting transcoelomic metastases as an early dissemination process using preexisting metastatic ability rather than an evolution model. Similarly, comparison of SBOC showed extensive sharing of somatic mutations, unequivocally indicating a common ancestry in all cases. Among the 17 patients with matched tumors, four patients gained PIK3CA amplifications and two patients gained c-MYC amplifications in the recurrent tumors, with no loss of amplification or gain of deletions. Primary cell lines and xenografts derived from chemotherapy-resistant tumors demonstrated sensitivity to JQ1 and GS-626510 (

Indexed as

MutationNeoplasm Recurrence, LocalProteinsProto-Oncogene Proteins c-mycAnimalsAntineoplastic AgentsAzepinesBRCA1 ProteinBRCA2 ProteinBromodomain Containing ProteinsCell Line, TumorClass I Phosphatidylinositol 3-KinasesFemaleHumansMiceNeoplasm MetastasisAntineoplastic AgentsAzepinesBRCA1 ProteinBRCA1 protein, humanBRCA2 ProteinBRCA2 protein, humanbromodomain and extra-terminal domain protein, humanBromodomain Containing ProteinsClass I Phosphatidylinositol 3-Kinases(+)-JQ1 compoundMYC protein, humanPIK3CA protein, humanProteinsProto-Oncogene Proteins c-mycTP53 protein, humanTriazolesTumor Suppressor Protein p53BET inhibitorsbilateral ovarian tumorsovarian carcinomawhole-exome sequencing

Identifiers

PMID30584090
PMCPMC6329978
OpenAlexW2905911461

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.