Evidence map›Paper›PMID 30581823›Full record

ArticleAnnals of translational medicine2018

Transcriptomic depression of immunological synapse as a signature of ventilator-associated pneumonia.

Raquel Almansa, Leonor Nogales, Marta Martín-Fernández, Montse Batlle, Esther Villareal, Lucia Rico, Alicia Ortega, Guillermo López-Campos, David Andaluz-Ojeda, Paula Ramírez and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Annals of translational medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
  6. Article
  7. Article
  8. Combined Use of Three Machine Learning Modeling Methods to Develop a Ten-Gene Signature for the Diagnosis of Ventilator-Associated Pneumonia.Medical science monitor : international medical journal of experimental and clinical research · 2020
    Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 3 countries.

Raquel AlmansaLaboratory of Biomedical Research in Sepsis (Bio.Sepsis), Hospital Clínico Universitario de Valladolid, SACYL/IECSCYL, España.
Leonor NogalesIntensive Care Medicine, Hospital Clínico Universitario de Valladolid, SACYL, España.
Marta Martín-FernándezLaboratory of Biomedical Research in Sepsis (Bio.Sepsis), Hospital Clínico Universitario de Valladolid, SACYL/IECSCYL, España.
Montse BatlleIntensive Care Medicine, Hospital Parc Taulí-Sabadell, Barcelona, España.
Esther VillarealIntensive Care Medicine, Hospital Universitario y Politecnico la Fe, Valencia, España.
Lucia RicoLaboratory of Biomedical Research in Sepsis (Bio.Sepsis), Hospital Clínico Universitario de Valladolid, SACYL/IECSCYL, España.
Alicia OrtegaLaboratory of Biomedical Research in Sepsis (Bio.Sepsis), Hospital Clínico Universitario de Valladolid, SACYL/IECSCYL, España.
Guillermo López-CamposCentre for Experimental Medicine, Queen's University Belfast, Northern Ireland, UK.
David Andaluz-OjedaIntensive Care Medicine, Hospital Clínico Universitario de Valladolid, SACYL, España.
Paula RamírezIntensive Care Medicine, Hospital Universitario y Politecnico la Fe, Valencia, España.
Lorenzo SociasIntensive Care Medicine, Hospital Son Llatzer, Palma de Mallorca, España.
Luis TamayoIntensive Care Medicine, Hospital Universitario Rio Hortega, Valladolid, España.
Jordi VallésIntensive Care Medicine, Hospital Parc Taulí-Sabadell, Barcelona, España.
Jesús F Bermejo-MartínLaboratory of Biomedical Research in Sepsis (Bio.Sepsis), Hospital Clínico Universitario de Valladolid, SACYL/IECSCYL, España.
Ignacio Martín-LoechesIntensive Care Medicine, Trinity Centre for Health Sciences, St James's University Hospital, Dublin, Ireland.
Hospital Clínico Universitario de Valladolid · ESDeleted InstitutionHospital Universitari i Politècnic La Fe · ESHospital Son Llatzer · ESHospital Universitario Río Hortega · ESInstituto de Estudios de Ciencias de la Salud de Castilla y León · ESQueen's University Belfast · GBSt. James's Hospital · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundVentilator-associated pneumonia (VAP) is one of the most commonly encountered intensive care unit (ICU) acquired infections worldwide. The objective of the study was to identify the immune alteration occurring in patients suffering from VAP at the transcriptomic level and explore its potential use for clinical diagnoses of this disease.

methodsWe performed a prospective observational study in five medical ICUs. Immunological gene expression profiles in the blood of VAP patients were compared with those of controls by using whole transcriptome microarrays and droplet digital polymerase chain reaction (ddPCR) in the first 24 hours following diagnosis.

resultsVAP patients showed significantly lower expression levels of HLA-DOA, HLA-DMA, HLA-DMB, ICOS, ICOSLG, IL2RA, CD1, CD3, CD28 and CD40LG. The molecules coded by these genes participate of the immunological synapse. CD1C, CD40LG and ICOS showed the highest values of area under the receiver operating characteristic curve (AUROC) with a good balance between sensibility and specificity.

conclusionsPatients with VAP show a transcriptomic depression of genes participating of the immunological synapse. It takes a commonplace event, namely VAP, and highlights a quite significant underlying immune suppressive state. In effect this small study will change how we regard VAP, and proposes that we regard it as an infection in an immune compromised host, and that immunity has a central role for ICU acquired infections. This may in time change clinical practice, as it has profound implications for the role of protocolised care, or bundles, in the prevention of VAP. Quantifying the expression in blood of this genes using ddPCR could be a useful approach for the diagnosis of VAP.

Indexed as

droplet digital polymerase chain reaction (ddPCR)immunological synapsemicroarraysVentilator-associated pneumonia (VAP)

Identifiers

PMID30581823
PMCPMC6275407
OpenAlexW2809579872

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.