Evidence map›Paper›PMID 30580994›Full record

ArticleJournal of cystic fibrosis : official journal of the European Cystic Fibrosis Society2019

Differences in the lower airway microbiota of infants with and without cystic fibrosis.

Katherine B Frayman, Kristine M Wylie, David S Armstrong, Rosemary Carzino, Stephanie D Davis, Thomas W Ferkol, Keith Grimwood, Gregory A Storch, Sarath C Ranganathan

Abstract read
In one paragraph

Article in Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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  7. The human microbiome in disease and pathology.APMIS : acta pathologica, microbiologica, et immunologica Scandinavica · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Katherine B FraymanDepartment of Respiratory and Sleep Medicine, Royal Children's Hospital, Victoria, Australia; Respiratory Diseases Group, Murdoch Childrens Research Institute, Victoria, Australia; Department of Paediatrics, University of Melbourne, Victoria, Australia; Allergy, Immunology and Cystic Fibrosis, Alfred Health, Victoria, Australia; Department of Respiratory Medicine, Monash Children's Hospital, Victoria, Australia. Electronic address: katherine.frayman@rch.org.au.
Kristine M WylieDepartment of Pediatrics, Washington University, St Louis, MO, United States; McDonnell Genome Institute, Washington University, St. Louis, MO, United States.
David S ArmstrongDepartment of Respiratory Medicine, Monash Children's Hospital, Victoria, Australia; Department of Paediatrics, Monash University, Victoria, Australia.
Rosemary CarzinoDepartment of Respiratory and Sleep Medicine, Royal Children's Hospital, Victoria, Australia; Respiratory Diseases Group, Murdoch Childrens Research Institute, Victoria, Australia.
Stephanie D DavisDepartment of Pediatrics, The University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC, United States.
Thomas W FerkolDepartment of Pediatrics, Washington University, St Louis, MO, United States; Department of Cell Biology and Physiology, Washington University, St Louis, MO, United States.
Keith GrimwoodMenzies Health Institute Queensland, Griffith University and Gold Coast Health, Gold Coast, Queensland, Australia.
Gregory A StorchDepartment of Pediatrics, Washington University, St Louis, MO, United States.
Sarath C RanganathanDepartment of Respiratory and Sleep Medicine, Royal Children's Hospital, Victoria, Australia; Respiratory Diseases Group, Murdoch Childrens Research Institute, Victoria, Australia; Department of Paediatrics, University of Melbourne, Victoria, Australia.

Funding

Viral Pathogenesis of Early Cystic Fibrosis Lung DiseaseR01HL116211 · NHLBI · INDIANA UNIVERSITY INDIANAPOLIS · PI DAVIS, STEPHANIE DUGGINS, FERKOL, THOMAS W · 2012 to 2015
$2.2M
NHLBI NIH HHS R01 HL116211
6 · The paper itself

Abstract

backgroundCystic fibrosis (CF) lung disease commences in infancy, and understanding the role of the microbiota in disease pathogenesis is critical. This study examined and compared the lower airway microbiota of infants with and without CF and its relationship to airway inflammation in the first months of life.

methodsInfants newly-diagnosed with CF were recruited into a single-centre study in Melbourne, Australia from 1992 to 2001. Bronchoalveolar lavage was performed at study entry. Healthy infants undergoing bronchoscopy to investigate chronic stridor acted as controls. Quantitative microbiological culture was performed and inflammatory markers were measured contemporaneously. 16S ribosomal RNA gene analysis was performed on stored samples.

resultsThirteen bronchoalveolar samples from infants with CF and nine from control infants, collected at median ages of 1.8-months (25th-75th percentile 1.5 to 3.1-months) and 5-months (25th-75th percentile 2.9 to 8.2-months) respectively, provided 16S rRNA gene data. Bacterial biomass was positively associated with inflammation. Alpha diversity was reduced in infants with CF and between-group compositional differences were apparent. These differences were driven by increased Staphylococcus and decreased Fusobacterium and were most apparent in symptomatic infants with CF.

conclusionIn CF lung disease, differences in lower airway microbial community composition and structure are established by age 6-months.

Indexed as

MicrobiotaAustraliaBronchoalveolar Lavage FluidBronchoscopyCase-Control StudiesCystic FibrosisFemaleHumansInfantLungMaleRNA, Ribosomal, 16SRNA, Ribosomal, 16S16S ribosomal RNABronchoalveolar lavage fluidCystic fibrosisInfantInflammationMicrobiota

Identifiers

PMID30580994
PMCPMC6586525

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.