Evidence map›Paper›PMID 30580387›Full record

ReviewJournal of biomolecular NMR2019

NMR-STAR: comprehensive ontology for representing, archiving and exchanging data from nuclear magnetic resonance spectroscopic experiments.

Eldon L Ulrich, Kumaran Baskaran, Hesam Dashti, Yannis E Ioannidis, Miron Livny, Pedro R Romero, Dimitri Maziuk, Jonathan R Wedell, Hongyang Yao, Hamid R Eghbalnia and 2 more

Abstract readReview
In one paragraph

Review in Journal of biomolecular NMR, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. The NMR Exchange Format (NEF): Specification and Applications.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Biological Magnetic Resonance Data Bank.Nucleic acids research · 2023
    Article
  8. Problems, principles and progress in computational annotation of NMR metabolomics data.Metabolomics : Official journal of the Metabolomic Society · 2022
    Review
  9. SpecDB: A relational database for archiving biomolecular NMR spectral data.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. The Protein Data Bank Archive.Methods in molecular biology (Clifton, N.J.) · 2021
    Review
  17. Article
  18. Review
  19. Review
  20. BioMagResBank (BMRB) as a Resource for Structural Biology.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Eldon L UlrichBiochemistry Department, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Kumaran BaskaranBiochemistry Department, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Hesam DashtiBiochemistry Department, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Yannis E IoannidisATHENA Research and Innovation Center, Athens, Greece.
Miron LivnyDepartment of Computer Sciences, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Pedro R RomeroBiochemistry Department, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Dimitri MaziukBiochemistry Department, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Jonathan R WedellBiochemistry Department, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Hongyang YaoBiochemistry Department, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Hamid R EghbalniaBiochemistry Department, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Jeffrey C HochDepartment of Molecular Biology and Biophysics, UConn Health, 263 Farmington Avenue, Farmington, CT, 06030, USA.
John L MarkleyBiochemistry Department, University of Wisconsin-Madison, Madison, WI, 53706, USA. jmarkley@biochem.wisc.edu.ORCID http://orcid.org/0000-0003-1799-6134

Funding

TRD3 NMRbox: Bayesian AnalyticsP41GM111135 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HOCH, JEFFREY C · 2015 to 2024
$14.0M
The BMRB as an evolving resource for biomolecular structure-function researchR01GM109046 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HOCH, JEFFREY C · 2014 to 2022
$6.6M
NIGMS NIH HHS P41 GM111135NIGMS NIH HHS P41GM111135NIGMS NIH HHS R01 GM109046NIGMS NIH HHS R01GM109046
6 · The paper itself

Abstract

The growth of the biological nuclear magnetic resonance (NMR) field and the development of new experimental technology have mandated the revision and enlargement of the NMR-STAR ontology used to represent experiments, spectral and derived data, and supporting metadata. We present here a brief description of the NMR-STAR ontology and software tools for manipulating NMR-STAR data files, editing the files, extracting selected data, and creating data visualizations. Detailed information on these is accessible from the links provided.

Indexed as

Biological OntologiesNuclear Magnetic Resonance, BiomolecularInformation Storage and RetrievalSoftwareVocabulary, ControlledArchival dataBiomoleculesData specificationExperimental conditionsExperiment descriptionNMR-STARNuclear magnetic resonance spectroscopyOntologyPythonR environmentVisualization of data

Identifiers

PMID30580387
PMCPMC6441402

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.