Evidence map›Paper›PMID 30578868›Full record

ArticleJournal of neuroscience methods2019

Seeing the long tail: A novel green fluorescent protein, SiriusGFP, for ultra long timelapse imaging.

Sheng Zhong, Felix Rivera-Molina, Alberto Rivetta, Derek Toomre, Joseph Santos-Sacchi, Dhasakumar Navaratnam

Open access · hybridAbstract read
In one paragraph

Article in Journal of neuroscience methods, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.5field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Bleaching-Resistant Super-Resolution Fluorescence Microscopy.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Sheng ZhongDept. of Surgery (Otolaryngology), Yale University School of Medicine, New Haven, CT, 06511, United States; Dept. of Neurology, United States.
Felix Rivera-MolinaDept. of Cell Biology, United States.
Alberto RivettaDept. of Cellular and Molecular Physiology, United States.
Derek ToomreDept. of Cell Biology, United States.
Joseph Santos-SacchiDept. of Surgery (Otolaryngology), Yale University School of Medicine, New Haven, CT, 06511, United States; Dept. of Neuroscience, United States; Dept. of Cellular and Molecular Physiology, United States.
Dhasakumar NavaratnamDept. of Surgery (Otolaryngology), Yale University School of Medicine, New Haven, CT, 06511, United States; Dept. of Neuroscience, United States; Dept. of Neurology, United States. Electronic address: dhasakumar.navaratnam@yale.edu.
Yale University · US

Funding

MEMBRANES PROPERTIES OF CELLS COMPRISING THE OHC SYSTEMR01DC000273 · NIDCD · YALE UNIVERSITY · PI SANTOS-SACCHI, JOSEPH R · 1989 to 2015
$6.8M
Membrane properties of the OHC systemR01DC016318 · NIDCD · YALE UNIVERSITY · PI DHASAKUMAR S NAVARATNAM, JOSEPH R SANTOS-SACCHI · 2017 to 2026
$6.7M
Structural correlates of prestin activity.R01DC008130 · NIDCD · YALE UNIVERSITY · PI NAVARATNAM, DHASAKUMAR S, SANTOS-SACCHI, JOSEPH R · 2007 to 2021
$6.1M
Studies on hair cell BK channelsR01DC007894 · NIDCD · YALE UNIVERSITY · PI NAVARATNAM, DHASAKUMAR S · 2006 to 2017
$3.6M
NIDCD NIH HHS R01 DC000273NIDCD NIH HHS R01 DC007894NIDCD NIH HHS R01 DC008130NIDCD NIH HHS R01 DC016318
6 · The paper itself

Abstract

backgroundFluorescent proteins (FPs) have widespread uses in cell biology. However, the practical applications of FPs are significantly limited due to their rapid photobleaching and misfolding when fused to target proteins. NEW

methodUsing a combination of novel and known mutations to eGFP, we developed a well folded and very photostable variant, SiriusGFP.

resultsThe fluorescence spectrum indicated that the excitation and emission peaks of SiriusGFP were red-shifted by 16 and 8 nm, respectively. Co- operative effects of two key mutations, S147R and S205 V, contribute to its photostability. SiriusGFP tagged to the mitochondrial outer membrane protein Omp25 showed sustained fluorescence during continuous 3D-scanning confocal imaging (4D confocal) compared to eGFP-tagged Omp25. Furthermore, with super-resolution structured illumination microscopy (SIM) we demonstrate marked improvements in image quality and resolution (130 nm in XY axis, and 310 nm in Z axis), as well as, decreased artifacts due to photobleaching. COMPARISON WITH EXISTING METHOD(S): Compared to eGFP. SiriusGFP shows a 2-fold increase in photostability in vitro, and folds well when fused to the N- and C- termini of cytoplasmic and membrane proteins. While its quantum yield is ˜3 fold lower than eGFP, its decreased brightness was more than compensated by its increasedphotostability in different experimental paradigms allowing practical experimentation without dynamic adjustment of light intensity or fluorescence sampling times.

conclusionsWe have developed a variant of eGFP, SiriusGFP, that shows over a two fold increase in photostability with utility in methods requiring sustained or high intensity excitation as in 4D confocal or SIM imaging.

Indexed as

Green Fluorescent ProteinsHEK293 CellsHeLa CellsHumansMicroscopy, ConfocalMicroscopy, FluorescenceGreen Fluorescent Proteins4D confocalFluorescenceGFPPhotostableSiriusGFPStructured Illumination Microscopy

Identifiers

PMID30578868
PMCPMC9431725
OpenAlexW2905152617

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.