Evidence map›Paper›PMID 30578303›Full record

ArticleGenes & development2019

Timely double-strand break repair and pathway choice in pericentromeric heterochromatin depend on the histone demethylase dKDM4A.

Aniek Janssen, Serafin U Colmenares, Timothy Lee, Gary H Karpen

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 49 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. KDM4 Demethylases: Structure, Function, and Inhibitors.Advances in experimental medicine and biology · 2023
    Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. Review
  16. Review
  17. Review
  18. Multi-scale dynamics of heterochromatin repair.Current opinion in genetics & development · 2021
    Review
  19. Genome Maintenance Mechanisms at the Chromatin Level.International journal of molecular sciences · 2021
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Aniek Janssen *Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
Serafin U Colmenares *Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.ORCID 0000-0002-4094-4220
Timothy LeeBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
Gary H KarpenBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.ORCID 0000-0003-1534-0385
Lawrence Berkeley National Laboratory · US

Funding

Organization and Function of the Heterochromatin Holodomain and SubdomainsR01GM117420 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KARPEN, GARY H · 2016 to 2019
$2.5M
Regulation of DNA Damage and Repair in HeterochromatinR01GM086613 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KARPEN, GARY H · 2011 to 2014
$1.6M
NIGMS NIH HHS R01 GM086613NIGMS NIH HHS R01 GM117420
6 · The paper itself

Abstract

Repair of DNA double-strand breaks (DSBs) must be orchestrated properly within diverse chromatin domains in order to maintain genetic stability. Euchromatin and heterochromatin domains display major differences in histone modifications, biophysical properties, and spatiotemporal dynamics of DSB repair. However, it is unclear whether differential histone-modifying activities are required for DSB repair in these distinct domains. We showed previously that the

Indexed as

DNA Breaks, Double-StrandedEpigenesis, GeneticAnimalsCells, CulturedDemethylationDNA End-Joining RepairDNA RepairDrosophila melanogasterDrosophila ProteinsHeterochromatinHistone DemethylasesHistonesHomologous RecombinationDrosophila ProteinsHeterochromatinHistone DemethylasesHistonesKDM4A protein, DrosophiladKDM4Adouble-strand breaksDrosophilaeuchromatinH3K56me3H3K9me3heterochromatinhistone demethylationhomologous recombinationrepair pathway choice

Identifiers

PMID30578303
PMCPMC6317320
OpenAlexW2796332259

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.