Evidence map›Paper›PMID 30578273›Full record

ArticleGenetics2019

Joint Analysis of Multiple Interaction Parameters in Genetic Association Studies.

Jihye Kim, Andrey Ziyatdinov, Vincent Laville, Frank B Hu, Eric Rimm, Peter Kraft, Hugues Aschard

Abstract read
In one paragraph

Article in Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. High-Dimensional Gene-Environment Interaction Analysis.Annual review of statistics and its application · 2025
    Article
  3. Gene-environment interactions in human health.Nature reviews. Genetics · 2024
    Review
  4. Article
  5. Article
  6. Article
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  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jihye KimProgram in Genetic Epidemiology and Statistical Genetics, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02115 jihyekim@hsph.harvard.edu haschard@hsph.harvard.edu.ORCID 0000-0001-7096-820X
Andrey ZiyatdinovProgram in Genetic Epidemiology and Statistical Genetics, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02115.
Vincent LavilleCentre de Bioinformatique, Biostatistique et Biologie Intégrative (C3BI), Institut Pasteur, 75724 Paris, France.
Frank B HuDepartment of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02115.
Eric RimmDepartment of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02115.
Peter KraftProgram in Genetic Epidemiology and Statistical Genetics, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02115.
Hugues AschardProgram in Genetic Epidemiology and Statistical Genetics, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02115 jihyekim@hsph.harvard.edu haschard@hsph.harvard.edu.ORCID 0000-0002-7554-6783

Funding

Transgenic CoreP30DK046200 · NIDDK · TUFTS MEDICAL CENTER · PI CORKEY, BARBARA E. · 1992 to 2021
$25.0M
Statistical Methods for Analysis of Massive Genetic and Genomic Data in Cancer ResearchR35CA197449 · NCI · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI XIHONG LIN · 2015 to 2026
$10.9M
Circulating plasma metabolites, diet, and risk of type 2 diabetesR01DK112940 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI HU, FRANK B, MORA, SAMIA · 2018 to 2021
$2.9M
Identifying Genome-scale Interaction Effects in Human Traits and DiseasesR21HG007687 · NHGRI · HARVARD SCHOOL OF PUBLIC HEALTH · PI ASCHARD, HUGUES · 2015 to 2016
$444k
NCI NIH HHS R35 CA197449NHGRI NIH HHS R21 HG007687NIDDK NIH HHS P30 DK046200NIDDK NIH HHS R01 DK112940
6 · The paper itself

Abstract

With growing human genetic and epidemiologic data, there has been increased interest for the study of gene-by-environment (G-E) interaction effects. Still, major questions remain on how to test jointly a large number of interactions between multiple SNPs and multiple exposures. In this study, we first compared the relative performance of four fixed-effect joint analysis approaches using simulated data, considering up to 10 exposures and 300 SNPs: (1) omnibus test, (2) multi-exposure and genetic risk score (GRS) test, (3) multi-SNP and environmental risk score (ERS) test, and (4) GRS-ERS test. Our simulations explored both linear and logistic regression while considering three statistics: the

Indexed as

Genetic Predisposition to DiseaseModels, GeneticAlgorithmsGenome-Wide Association StudyHumansPolymorphism, Single Nucleotideenvironment risk scoregene and environment interactiongenetic risk scorejoint test analysisScore test statistic

Identifiers

PMID30578273
PMCPMC6366922

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.