Evidence map›Paper›PMID 30576493›Full record

ArticleDatabase : the journal of biological databases and curation2018

Foundry: a message-oriented, horizontally scalable ETL system for scientific data integration and enhancement.

Ibrahim Burak Ozyurt, Jeffrey S Grethe

Open access · goldAbstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Bio-AnswerFinder: a system to find answers to questions from biomedical texts.Database : the journal of biological databases and curation · 2020
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Ibrahim Burak OzyurtCenter for Research in Biological Systems, University of California, San Diego, La Jolla, CA, USA.
Jeffrey S GretheCenter for Research in Biological Systems, University of California, San Diego, La Jolla, CA, USA.
University of California San Diego · US

Funding

NIDDK Network Coordinating UnitU24DK097771 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Shuibing Chen, Jeffrey S. Grethe · 2013 to 2026
$20.9M
Resource DiscoveryP41EB019936 · NIBIB · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI David Nelson Kennedy · 2016 to 2026
$15.2M
BioCADDIE: Biomedical and healthCAre Data Discovery and Indexing Engine centerU24AI117966 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OHNO-MACHADO, LUCILA · 2014 to 2016
$10.9M
OPERATION, SUPPORT AND STRATEGIC ENHANCEMENT OF THE NEUROSCIENCE INFORMATION FRAMEWORKU24DA039832 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GRETHE, JEFFREY S., MARTONE, MARYANN E · 2015 to 2016
$2.0M
NIAID NIH HHS U24 AI117966NIBIB NIH HHS P41 EB019936NIDA NIH HHS U24 DA039832NIDDK NIH HHS U24 DK097771
6 · The paper itself

Abstract

Data generated by scientific research enables further advancement in science through reanalyses and pooling of data for novel analyses. With the increasing amounts of scientific data generated by biomedical research providing researchers with more data than they have ever had access to, finding the data matching the researchers' requirements continues to be a major challenge and will only grow more challenging as more data is produced and shared. In this paper, we introduce a horizontally scalable distributed extract-transform-load system to tackle scientific data aggregation, transformation and enhancement for scientific data discovery and retrieval. We also introduce a data transformation language for biomedical curators allowing for the transformation and combination of data/metadata from heterogeneous data sources. Applicability of the system for scientific data is illustrated in biomedical and earth science domains.

Indexed as

Databases, FactualAbstracting and IndexingBiomedical ResearchComputational BiologyData CurationInformation Storage and RetrievalProgramming Languages

Identifiers

PMID30576493
PMCPMC6301337
OpenAlexW2914605960

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.