Evidence map›Paper›PMID 30576353›Full record

ArticlePloS one2018

Brain transcriptome changes in the aging Drosophila melanogaster accompany olfactory memory performance deficits.

Rodrigo Pacifico, Courtney M MacMullen, Erica Walkinshaw, Xiaofan Zhang, Ronald L Davis

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  6. Dynamic Changes in Gene Expression Through Aging inbioRxiv : the preprint server for biology · 2024
    Article
  7. Article
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  9. Developmental Diet Alters the Fecundity-Longevity Relationship and Age-Related Gene Expression in Drosophila melanogaster.The journals of gerontology. Series A, Biological sciences and medical sciences · 2023
    Article
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  20. Aging mechanisms-A perspective mostly fromAdvanced genetics (Hoboken, N.J.) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Rodrigo PacificoDepartment of Neuroscience, The Scripps Research Institute-Florida, Jupiter, Florida, United States of America.ORCID 0000-0003-2581-6818
Courtney M MacMullenDepartment of Neuroscience, The Scripps Research Institute-Florida, Jupiter, Florida, United States of America.
Erica WalkinshawDepartment of Neuroscience, The Scripps Research Institute-Florida, Jupiter, Florida, United States of America.
Xiaofan ZhangDepartment of Neuroscience, The Scripps Research Institute-Florida, Jupiter, Florida, United States of America.
Ronald L DavisDepartment of Neuroscience, The Scripps Research Institute-Florida, Jupiter, Florida, United States of America.
Scripps Research Institute · US

Funding

Single neuron biology, aging, and memory.R01AG049037 · NIA · SCRIPPS FLORIDA · PI DAVIS, RONALD L · 2015 to 2019
$2.0M
NIA NIH HHS R01 AG049037
6 · The paper itself

Abstract

Cognitive decline is a common occurrence of the natural aging process in animals and studying age-related changes in gene expression in the brain might shed light on disrupted molecular pathways that play a role in this decline. The fruit fly is a useful neurobiological model for studying aging due to its short generational time and relatively small brain size. We investigated age-dependent changes in the Drosophila melanogaster whole-brain transcriptome by comparing 5-, 20-, 30- and 40-day-old flies of both sexes. We used RNA-Sequencing of dissected brain samples followed by differential expression, temporal clustering, co-expression network and gene ontology enrichment analyses. We found an overall decline in expression of genes from the mitochondrial oxidative phosphorylation pathway that occurred as part of aging. We also detected, in females, a pattern of continuously declining expression for many neuronal function genes, which was unexpectedly reversed later in life. This group of genes was highly enriched in memory-impairing genes previously identified through an RNAi screen. We also identified deficits in short-term olfactory memory performance in older flies of both sexes, some of which matched the timing of certain changes in the brain transcriptome. Our study provides the first transcriptome profile of aging brains from fruit flies of both sexes, and it will serve as an important resource for those who study aging and cognitive decline in this model.

Indexed as

Age FactorsAgingAnimalsBrainCognitive DysfunctionDrosophila melanogasterDrosophila ProteinsFemaleGene Expression ProfilingGene Regulatory NetworksMaleMemoryMitochondriaModels, AnimalOlfactory PerceptionOxidative PhosphorylationDrosophila Proteins

Identifiers

PMID30576353
PMCPMC6303037
OpenAlexW2906233906

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.