Evidence map›Paper›PMID 30575763›Full record

ArticleNature communications2018

A structural and dynamic model for the assembly of Replication Protein A on single-stranded DNA.

Luke A Yates, Ricardo J Aramayo, Nilisha Pokhrel, Colleen C Caldwell, Joshua A Kaplan, Rajika L Perera, Maria Spies, Edwin Antony, Xiaodong Zhang

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed, 152 citations in OpenAlex.

  1. Article
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  9. Review
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  11. Article
  12. Slippage reconfiguration of trinucleotide repeat hairpins impedes resolution by human replication protein A.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  13. The Zinc Finger Ran-Binding Protein 3 (ZRANB3): An Advanced Perspective.International journal of molecular sciences · 2026
    Review
  14. Article
  15. Review
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  17. Article
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  19. Article
  20. Article

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Luke A YatesSection of Structural Biology, Department of Medicine, Imperial College London, Sir Alexander Fleming Building, South Kensington, London, SW7 2AZ, UK.ORCID http://orcid.org/0000-0002-5023-0803
Ricardo J AramayoSection of Structural Biology, Department of Medicine, Imperial College London, Sir Alexander Fleming Building, South Kensington, London, SW7 2AZ, UK.
Nilisha PokhrelDepartment of Biological Sciences, Marquette University, Milwaukee, WI, 53201, USA.
Colleen C CaldwellDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, IA, 52241, USA.
Joshua A KaplanSection of Structural Biology, Department of Medicine, Imperial College London, Sir Alexander Fleming Building, South Kensington, London, SW7 2AZ, UK.
Rajika L PereraSection of Structural Biology, Department of Medicine, Imperial College London, Sir Alexander Fleming Building, South Kensington, London, SW7 2AZ, UK.
Maria SpiesDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, IA, 52241, USA.ORCID http://orcid.org/0000-0002-7375-8037
Edwin AntonyDepartment of Biological Sciences, Marquette University, Milwaukee, WI, 53201, USA.ORCID http://orcid.org/0000-0002-1888-054X
Xiaodong ZhangSection of Structural Biology, Department of Medicine, Imperial College London, Sir Alexander Fleming Building, South Kensington, London, SW7 2AZ, UK. xiaodong.zhang@imperial.ac.uk.ORCID http://orcid.org/0000-0001-9786-7038
Imperial College London · GBMarquette University · USUniversity of Iowa · USFoothill College · US

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Douglas Robert Spitz · 2000 to 2026
$70.0M
Predoctoral Training in the Pharmacological SciencesT32GM067795 · NIGMS · UNIVERSITY OF IOWA · PI STRACK, STEFAN · 2004 to 2021
$3.4M
Fluorescent probes to monitor Rad51 nucleoprotein dynamicsR15GM110671 · NIGMS · UTAH STATE UNIVERSITY · PI ANTONY, EDWIN · 2015 to 2015
$346k
Medical Research Council MR/J001201/1NIGMS NIH HHS R15 GM110671NIGMS NIH HHS T32 GM067795Wellcome Trust
6 · The paper itself

Abstract

Replication Protein A (RPA), the major eukaryotic single stranded DNA-binding protein, binds to exposed ssDNA to protect it from nucleases, participates in a myriad of nucleic acid transactions and coordinates the recruitment of other important players. RPA is a heterotrimer and coats long stretches of single-stranded DNA (ssDNA). The precise molecular architecture of the RPA subunits and its DNA binding domains (DBDs) during assembly is poorly understood. Using cryo electron microscopy we obtained a 3D reconstruction of the RPA trimerisation core bound with ssDNA (∼55 kDa) at ∼4.7 Å resolution and a dimeric RPA assembly on ssDNA. FRET-based solution studies reveal dynamic rearrangements of DBDs during coordinated RPA binding and this activity is regulated by phosphorylation at S178 in RPA70. We present a structural model on how dynamic DBDs promote the cooperative assembly of multiple RPAs on long ssDNA.

Indexed as

Models, StructuralCryoelectron MicroscopyDNA, Single-StrandedEscherichia coliFluorescence Resonance Energy TransferProtein DomainsProtein MultimerizationReplication Protein ASaccharomyces cerevisiaeDNA, Single-StrandedReplication Protein A

Identifiers

PMID30575763
PMCPMC6303327
OpenAlexW2904840497

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.