Evidence map›Paper›PMID 30575749›Full record

ArticleNature communications2018

Oxygen-dependent proteolysis regulates the stability of angiosperm polycomb repressive complex 2 subunit VERNALIZATION 2.

Daniel J Gibbs, Hannah M Tedds, Anne-Marie Labandera, Mark Bailey, Mark D White, Sjon Hartman, Colleen Sprigg, Sophie L Mogg, Rory Osborne, Charlene Dambire and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 135 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. HNature · 2026
    Article
  5. The next frontier: Exploring plant hypoxia sensing and response mechanisms through synthetic biology.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Global profiling of N-terminal cysteine-dependent degradation mechanisms.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Oxygen sensing and plant adaptation to flooding in a changing climate.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  17. Article
  18. Review
  19. Article
  20. Review

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Daniel J GibbsSchool of Biosciences, University of Birmingham, Edgbaston, B15 2TT, UK. d.gibbs@bham.ac.uk.ORCID http://orcid.org/0000-0002-4100-6682
Hannah M TeddsSchool of Biosciences, University of Birmingham, Edgbaston, B15 2TT, UK.ORCID http://orcid.org/0000-0003-1583-6276
Anne-Marie LabanderaSchool of Biosciences, University of Birmingham, Edgbaston, B15 2TT, UK.
Mark BaileySchool of Biosciences, University of Birmingham, Edgbaston, B15 2TT, UK.
Mark D WhiteChemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA, UK.
Sjon HartmanPlant Ecophysiology, Institute of Environmental Biology, Faculty of Science, Utrecht University, Padualaan 8, Utrecht, 3584 CH, The Netherlands.ORCID http://orcid.org/0000-0002-6709-6436
Colleen SpriggSchool of Biosciences, University of Birmingham, Edgbaston, B15 2TT, UK.
Sophie L MoggSchool of Biosciences, University of Birmingham, Edgbaston, B15 2TT, UK.ORCID http://orcid.org/0000-0003-3025-5525
Rory OsborneSchool of Biosciences, University of Birmingham, Edgbaston, B15 2TT, UK.
Charlene DambireSchool of Biosciences, University of Nottingham, Loughborough, LE12 5RD, UK.
Tinne BoeckxSchool of Biosciences, University of Nottingham, Loughborough, LE12 5RD, UK.
Zachary PalingSchool of Biosciences, University of Birmingham, Edgbaston, B15 2TT, UK.
Laurentius A C J VoesenekPlant Ecophysiology, Institute of Environmental Biology, Faculty of Science, Utrecht University, Padualaan 8, Utrecht, 3584 CH, The Netherlands.
Emily FlashmanChemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA, UK.
Michael J HoldsworthSchool of Biosciences, University of Nottingham, Loughborough, LE12 5RD, UK. michael.holdsworth@nottingham.ac.uk.ORCID http://orcid.org/0000-0002-3954-9215
University of Birmingham · GBUniversity of Nottingham · GBUniversity of Oxford · GBUtrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The polycomb repressive complex 2 (PRC2) regulates epigenetic gene repression in eukaryotes. Mechanisms controlling its developmental specificity and signal-responsiveness are poorly understood. Here, we identify an oxygen-sensitive N-terminal (N-) degron in the plant PRC2 subunit VERNALIZATION(VRN) 2, a homolog of animal Su(z)12, that promotes its degradation via the N-end rule pathway. We provide evidence that this N-degron arose early during angiosperm evolution via gene duplication and N-terminal truncation, facilitating expansion of PRC2 function in flowering plants. We show that proteolysis via the N-end rule pathway prevents ectopic VRN2 accumulation, and that hypoxia and long-term cold exposure lead to increased VRN2 abundance, which we propose may be due to inhibition of VRN2 turnover via its N-degron. Furthermore, we identify an overlap in the transcriptional responses to hypoxia and prolonged cold, and show that VRN2 promotes tolerance to hypoxia. Our work reveals a mechanism for post-translational regulation of VRN2 stability that could potentially link environmental inputs to the epigenetic control of plant development.

Indexed as

Evolution, MolecularGene Expression Regulation, PlantAmino Acid SequenceArabidopsisArabidopsis ProteinsCarrier ProteinsCold TemperatureDNA-Binding ProteinsHypoxiaNuclear ProteinsOxygenPolycomb Repressive Complex 2Arabidopsis ProteinsCarrier ProteinsDNA-Binding ProteinsNuclear ProteinsOxygenPolycomb Repressive Complex 2VRN2 protein, Arabidopsis

Identifiers

PMID30575749
PMCPMC6303374
OpenAlexW2903876652

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.