Evidence map›Paper›PMID 30575741›Full record

ArticleNature communications2018

Serine synthesis through PHGDH coordinates nucleotide levels by maintaining central carbon metabolism.

Michael A Reid, Annamarie E Allen, Shiyu Liu, Maria V Liberti, Pei Liu, Xiaojing Liu, Ziwei Dai, Xia Gao, Qian Wang, Ying Liu and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 126 papers.

0numbers the graph read from it
0cells of the map it votes in
126citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

126 citing papers in PubMed.

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  17. Multi-Omics and -Organ Insights into Energy Metabolic Adaptations in Early Sepsis Onset.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  18. Article
  19. Review
  20. Article

66 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Michael A ReidDepartment of Pharmacology & Cancer Biology, Duke University School of Medicine, Durham, NC, 27710, USA.
Annamarie E AllenDepartment of Pharmacology & Cancer Biology, Duke University School of Medicine, Durham, NC, 27710, USA.
Shiyu LiuDepartment of Pharmacology & Cancer Biology, Duke University School of Medicine, Durham, NC, 27710, USA.
Maria V LibertiDepartment of Pharmacology & Cancer Biology, Duke University School of Medicine, Durham, NC, 27710, USA.
Pei LiuCollege of Chemistry and Molecular Engineering, Peking-Tsinghua Center for Life Sciences, Center for Quantitative Biology, Peking University, Beijing, 100871, China.
Xiaojing LiuDepartment of Pharmacology & Cancer Biology, Duke University School of Medicine, Durham, NC, 27710, USA.
Ziwei DaiDepartment of Pharmacology & Cancer Biology, Duke University School of Medicine, Durham, NC, 27710, USA.
Xia GaoDepartment of Pharmacology & Cancer Biology, Duke University School of Medicine, Durham, NC, 27710, USA.
Qian WangCollege of Chemistry and Molecular Engineering, Peking-Tsinghua Center for Life Sciences, Center for Quantitative Biology, Peking University, Beijing, 100871, China.
Ying LiuCollege of Chemistry and Molecular Engineering, Peking-Tsinghua Center for Life Sciences, Center for Quantitative Biology, Peking University, Beijing, 100871, China.
Luhua LaiCollege of Chemistry and Molecular Engineering, Peking-Tsinghua Center for Life Sciences, Center for Quantitative Biology, Peking University, Beijing, 100871, China.ORCID http://orcid.org/0000-0002-8343-7587
Jason W LocasaleDepartment of Pharmacology & Cancer Biology, Duke University School of Medicine, Durham, NC, 27710, USA. Jason.Locasale@duke.edu.ORCID http://orcid.org/0000-0002-7766-3502

Funding

Pharmacological Sciences Training ProgramT32GM007105 · NIGMS · DUKE UNIVERSITY · PI KUHN, CYNTHIA M · 1985 to 2019
$9.0M
Dietary methionine and cancerR01CA193256 · NCI · DUKE UNIVERSITY · PI LOCASALE, JASON W. · 2015 to 2023
$3.1M
Understanding metabolic flux and the control of mammalian cell growthR00CA168997 · NCI · DUKE UNIVERSITY · PI LOCASALE, JASON W. · 2013 to 2015
$695k
Metabolic and Genetic Heterogeneity in CancerF99CA222986 · NCI · CORNELL UNIVERSITY · PI LIBERTI, MARIA V · 2017 to 2018
$83k
NCI NIH HHS F99 CA222986NCI NIH HHS R00 CA168997NCI NIH HHS R01 CA193256NIGMS NIH HHS T32 GM007105
6 · The paper itself

Abstract

Phosphoglycerate dehydrogenase (PHGDH) catalyzes the committed step in de novo serine biosynthesis. Paradoxically, PHGDH and serine synthesis are required in the presence of abundant environmental serine even when serine uptake exceeds the requirements for nucleotide synthesis. Here, we establish a mechanism for how PHGDH maintains nucleotide metabolism. We show that inhibition of PHGDH induces alterations in nucleotide metabolism independent of serine utilization. These changes are not attributable to defects in serine-derived nucleotide synthesis and redox maintenance, another key aspect of serine metabolism, but result from disruption of mass balance within central carbon metabolism. Mechanistically, this leads to simultaneous alterations in both the pentose phosphate pathway and the tri-carboxylic acid cycle, as we demonstrate based on a quantitative model. These findings define a mechanism whereby disruption of one metabolic pathway induces toxicity by simultaneously affecting the activity of multiple related pathways.

Indexed as

Citric Acid CyclePentose Phosphate PathwayHCT116 CellsHumansMCF-7 CellsMetabolic Flux AnalysisNucleotidesPhosphoglycerate DehydrogenaseSerineNucleotidesPhosphoglycerate DehydrogenaseSerine

Identifiers

PMID30575741
PMCPMC6303315

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.