Evidence map›Paper›PMID 30575730›Full record

ArticleNature communications2018

Identification of ADAR1 adenosine deaminase dependency in a subset of cancer cells.

Hugh S Gannon, Tao Zou, Michael K Kiessling, Galen F Gao, Diana Cai, Peter S Choi, Alexandru P Ivan, Ilana Buchumenski, Ashton C Berger, Jonathan T Goldstein and 6 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 153 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
153citing papers in PubMed, 1 pooled it
11.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

153 citing papers in PubMed, 1 synthesis or guideline pooled it, 252 citations in OpenAlex.

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93 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 3 countries.

Hugh S GannonDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.
Tao ZouDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.
Michael K KiesslingDepartment of Gastroenterology and Hepatology, University of Zurich and University Hospital Zürich, Zürich, 8091, Switzerland.
Galen F GaoBroad Institute of Harvard and MIT, Cambridge, MA, 02142, USA.ORCID http://orcid.org/0000-0003-3143-9270
Diana CaiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.
Peter S ChoiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.
Alexandru P IvanDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.ORCID http://orcid.org/0000-0001-7925-0253
Ilana BuchumenskiThe Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, 52900, Ramat Gan, Israel.
Ashton C BergerBroad Institute of Harvard and MIT, Cambridge, MA, 02142, USA.
Jonathan T GoldsteinBroad Institute of Harvard and MIT, Cambridge, MA, 02142, USA.
Andrew D CherniackDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.ORCID http://orcid.org/0000-0003-0470-0111
Francisca VazquezBroad Institute of Harvard and MIT, Cambridge, MA, 02142, USA.ORCID http://orcid.org/0000-0002-2857-4685
Aviad TsherniakBroad Institute of Harvard and MIT, Cambridge, MA, 02142, USA.ORCID http://orcid.org/0000-0002-3797-1877
Erez Y LevanonThe Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, 52900, Ramat Gan, Israel.ORCID http://orcid.org/0000-0002-3641-4198
William C HahnDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.ORCID http://orcid.org/0000-0003-2840-9791
Matthew MeyersonDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02215, USA. matthew_meyerson@dfci.harvard.edu.ORCID http://orcid.org/0000-0002-9133-8108
Broad Institute · USBar-Ilan University · ILDana-Farber Cancer Institute · USUniversity of Zurich · CH

Funding

StructureP01CA154303 · NCI · DANA-FARBER CANCER INST · PI MEYERSON, MATTHEW L. · 2012 to 2021
$17.8M
Physician Scientist Training in Cancer ResearchT32CA009172 · NCI · DANA-FARBER CANCER INSTITUTE · PI Jennifer R Brown, James A. DeCaprio · 1985 to 2026
$17.1M
NKX2-1 Enhancer Amplification and Lineage Addiction in Lung AdenocarcinomaR35CA197568 · NCI · DANA-FARBER CANCER INST · PI Matthew L. Meyerson · 2015 to 2026
$12.4M
The Dana-Farber Cancer Institute Cancer Target Discovery and Development CenterU01CA176058 · NCI · DANA-FARBER CANCER INST · PI HAHN, WILLIAM C. · 2013 to 2021
$7.8M
Extraordinary responder cell lines reveal unique targetable genetic dependenciesF32CA196141 · NCI · DANA-FARBER CANCER INST · PI GANNON, HUGH S. · 2015 to 2016
$112k
NCI NIH HHS F32 CA196141NCI NIH HHS P01 CA154303NCI NIH HHS R35 CA197568NCI NIH HHS T32 CA009172NCI NIH HHS U01 CA176058
6 · The paper itself

Abstract

Systematic exploration of cancer cell vulnerabilities can inform the development of novel cancer therapeutics. Here, through analysis of genome-scale loss-of-function datasets, we identify adenosine deaminase acting on RNA (ADAR or ADAR1) as an essential gene for the survival of a subset of cancer cell lines. ADAR1-dependent cell lines display increased expression of interferon-stimulated genes. Activation of type I interferon signaling in the context of ADAR1 deficiency can induce cell lethality in non-ADAR1-dependent cell lines. ADAR deletion causes activation of the double-stranded RNA sensor, protein kinase R (PKR). Disruption of PKR signaling, through inactivation of PKR or overexpression of either a wildtype or catalytically inactive mutant version of the p150 isoform of ADAR1, partially rescues cell lethality after ADAR1 loss, suggesting that both catalytic and non-enzymatic functions of ADAR1 may contribute to preventing PKR-mediated cell lethality. Together, these data nominate ADAR1 as a potential therapeutic target in a subset of cancers.

Indexed as

A549 CellsAdenosine DeaminaseeIF-2 KinaseGene DeletionGene Expression Regulation, NeoplasticHumansInterferon-Induced Helicase, IFIH1InterferonsLung NeoplasmsPhosphorylationRNA-Binding ProteinsADAR protein, humanAdenosine DeaminaseEIF2AK2 protein, humaneIF-2 KinaseIFIH1 protein, humanInterferon-Induced Helicase, IFIH1InterferonsRNA-Binding Proteins

Identifiers

PMID30575730
PMCPMC6303303
OpenAlexW2903723780

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.