Evidence map›Paper›PMID 30575147›Full record

ArticleMolecular carcinogenesis2019

Inter- and intra-tumor heterogeneity of SMAD4 loss in head and neck squamous cell carcinomas.

Ariel L Hernandez, Ying Wang, Hilary L Somerset, Stephen B Keysar, Dara L Aisner, Carrie Marshall, Daniel W Bowles, Sana D Karam, David Raben, Antonio Jimeno and 2 more

Abstract read
In one paragraph

Article in Molecular carcinogenesis, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.4field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Review
  13. PARP Inhibition Enhances Radiotherapy of SMAD4-Deficient Human Head and Neck Squamous Cell Carcinomas in Experimental Models.Clinical cancer research : an official journal of the American Association for Cancer Research · 2020
    Article
  14. Review
  15. Review
  16. Article
  17. Frontiers in oncology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Ariel L HernandezDepartment of Pathology, School of Medicine, Molecular Biology Program, Medical Scientist Training Program, University of Colorado, Aurora, Colorado.
Ying WangUniversity of Colorado Cancer Center, Molecular Pathology/Cytogenetics Shared Resource, University of Colorado, Aurora, Colorado.
Hilary L SomersetDepartment of Pathology, School of Medicine, Molecular Biology Program, Medical Scientist Training Program, University of Colorado, Aurora, Colorado.
Stephen B KeysarDepartment of Medical Oncology, University of Colorado, Aurora, Colorado.
Dara L AisnerDepartment of Pathology, School of Medicine, Molecular Biology Program, Medical Scientist Training Program, University of Colorado, Aurora, Colorado.
Carrie MarshallDepartment of Pathology, School of Medicine, Molecular Biology Program, Medical Scientist Training Program, University of Colorado, Aurora, Colorado.
Daniel W BowlesVeterans Affairs Medical Center, VA Eastern Colorado Health Care System, Aurora, Colorado.
Sana D KaramDepartment of Radiation Oncology, University of Colorado, Aurora, Colorado.
David RabenDepartment of Radiation Oncology, University of Colorado, Aurora, Colorado.
Antonio JimenoDepartment of Medical Oncology, University of Colorado, Aurora, Colorado.
Marileila Varella-GarciaUniversity of Colorado Cancer Center, Molecular Pathology/Cytogenetics Shared Resource, University of Colorado, Aurora, Colorado.
Xiao-Jing WangDepartment of Pathology, School of Medicine, Molecular Biology Program, Medical Scientist Training Program, University of Colorado, Aurora, Colorado.ORCID 0000-0001-8695-7361
University of Colorado Anschutz Medical Campus · USThe Medical Center of Aurora · USVA Eastern Colorado Health Care System · USUniversity of Colorado Cancer Center · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Paul Calabresis Award in Clinical Oncology ResearchK12CA086913 · NCI · UNIVERSITY OF COLORADO DENVER · PI VIRGINIA F. BORGES, Jill E Slansky · 2000 to 2026
$17.8M
Targeting PD-L1 interactome signaling to enhance immunotherapy efficacy in head and neck squamous cell cancerR01CA149456 · NCI · UNIVERSITY OF COLORADO DENVER · PI Antonio Jimeno · 2010 to 2026
$5.6M
Training in Translational Research of Lung, Head and Neck CancerT32CA174648 · NCI · UNIVERSITY OF COLORADO DENVER · PI KARAM, SANA D · 2013 to 2022
$4.2M
Identifying oral cancer stem cell properties affected by the microenvironmentR01DE024371 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI JIMENO, ANTONIO, WANG, XIAO-JING · 2014 to 2017
$2.1M
Mechanisms of Breaking Indolence in Squamous Cell CarcinomaI01BX003232 · VA · VA NORTHERN CALIFORNIA HEALTH CARE SYS · PI WANG, XIAO-JING · 2017 to 2025
–
BLRD VA I01 BX003232National Research Service Award Institutional Training (T32CA174648)NCI NIH HHS K12 CA086913NCI NIH HHS P30 CA046934NCI NIH HHS R01 CA149456NCI NIH HHS T32 CA174648NIDCR NIH HHS R01 DE024371NIH HHS K12CA086913NIH HHS P30 CA046934NIH HHS R01 DE024371NIH HHS T32CA174648Paul Calabresi Career Development Award (K12, CA086913)VA I01 BX003232
6 · The paper itself

Abstract

Reports regarding the frequency of SMAD4 loss in human head and neck squamous cell carcinoma (HNSCC) vary significantly. We have shown that SMAD4 deletion contributes to HNSCC initiation and progression. Therefore, accurately detecting genetic SMAD4 loss is critical to determine prognosis and therapeutic interventions in personalized medicine. We developed a SMAD4 fluorescence in situ hybridization (FISH) assay to identify chromosomal SMAD4 loss at the single cell level of primary HNSCC specimens and patient derived xenograft (PDX) tumors derived from HNSCCs. SMAD4 heterozygous loss was detected in 35% of primary HNSCCs and 41.3% of PDX tumors. Additionally, 4.3% of PDX tumors had SMAD4 homozygous loss. These frequencies of SMAD4 loss were similar to those in The Cancer Genome Atlas (TCGA). However, we identified significant heterogeneities of SMAD4 loss (partial or complete) among cells within each tumor. We also found that aneuploidy (monosomy and polysomy) contributed greatly to how to define chromosomal SMAD4 deletion. Furthermore, in cultured PDX tumors, SMAD4 mutant cells outcompeted SMAD4 wildtype cells, resulting in establishing homogenous SMAD4 mutant HNSCC cell lines with partial or complete genomic SMAD4 loss, suggesting a survival advantage of SMAD4 mutant cells. Taken together, our study reveals inter- and intra-tumor heterogeneities of SMAD4 chromosomal loss in HNSCCs. Further, SMAD4 FISH assay provides a platform for future clinical diagnosis of SMAD4 chromosomal loss that potentially serves as a molecular marker for prognosis and therapeutic intervention in cancer patients.

Indexed as

Chromosome AberrationsGene DeletionGene Expression Regulation, NeoplasticGenetic HeterogeneityAnimalsCarcinoma, Squamous CellHead and Neck NeoplasmsHumansIn Situ Hybridization, FluorescenceMiceSmad4 ProteinTumor Cells, CulturedXenograft Model Antitumor AssaysSmad4 ProteinSMAD4 protein, humanAneuploidyChromosomal SMAD4 deletiongenomic instability

Identifiers

PMID30575147
PMCPMC6637962
OpenAlexW2906134792

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.