Evidence map›Paper›PMID 30573798›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2019

Biallelic germline nonsense variant of MLH3 underlies polyposis predisposition.

Alisa Olkinuora, Taina T Nieminen, Emma Mårtensson, Anna Rohlin, Ari Ristimäki, Laura Koskenvuo, Anna Lepistö, Swedish Extended Genetic Analysis of Colorectal Neoplasia (SWEN) Study Group, Samuel Gebre-Medhin, Margareta Nordling and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 2 pooled it
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 2 syntheses or guidelines pooled it, 60 citations in OpenAlex.

  1. Guideline
  2. Guideline
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Genetic predisposition to polyposis syndromes.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2025
    Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Alisa Olkinuora *Department of Medical and Clinical Genetics, Medicum, University of Helsinki, Helsinki, Finland. alisa.olkinuora@helsinki.fi.ORCID http://orcid.org/0000-0003-3987-9924
Taina T Nieminen *Department of Medical and Clinical Genetics, Medicum, University of Helsinki, Helsinki, Finland.
Emma MårtenssonDepartment of Clinical Genetics and Pathology, Region Skåne, Lund, Sweden.
Anna RohlinDepartment of Pathology and Genetics, Institute of Biomedicine, Sahlgrenska Academy at University of Gothenburg, Gothenburg, Sweden.
Ari RistimäkiGenome-Scale Biology, Research Programs Unit, University of Helsinki, Helsinki, Finland.
Laura KoskenvuoDepartment of Colorectal Surgery, Abdominal Center, Helsinki University Hospital, Helsinki, Finland.
Anna LepistöDepartment of Colorectal Surgery, Abdominal Center, Helsinki University Hospital, Helsinki, Finland.
Swedish Extended Genetic Analysis of Colorectal Neoplasia (SWEN) Study Group
Samuel Gebre-MedhinDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, Lund, Sweden.
Margareta NordlingDepartment of Pathology and Genetics, Institute of Biomedicine, Sahlgrenska Academy at University of Gothenburg, Gothenburg, Sweden.
Päivi PeltomäkiDepartment of Medical and Clinical Genetics, Medicum, University of Helsinki, Helsinki, Finland.
University of Helsinki · FIHelsinki University Hospital · FISahlgrenska University Hospital · SELund University · SEUniversity of Gothenburg · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeSome 10% of familial adenomatous polyposis (FAP) and 80% of attenuated polyposis (AFAP) cases remain molecularly unexplained. We scrutinized such cases by exome-wide and targeted methods to search for novel susceptibility genes.

methodsExome sequencing was conducted on 40 unexplained (mainly sporadic) cases with FAP or AFAP from Finland. The DNA mismatch repair (MMR) gene MLH3 (MutL Homolog 3) was pinpointed and prompted a subsequent screen of ~1000 Swedish patients referred to clinical panel sequencing for colon tumor susceptibility.

resultsThree homozygous carriers of a truncating variant in MLH3, c.3563C>G, p.Ser1188Ter, were identified among the index cases from the Finnish series. An additional biallelic carrier of the same variant was present in the Swedish series. All four patients shared a 0.8-Mb core haplotype around MLH3, suggesting a founder variant. Colorectal polyps from variant carriers showed no instability at mono-, di-, tri-, or tetranucleotide repeats, in agreement with previous findings of a minor role of MLH3 in MMR. Multiple loci were affected by loss of heterozygosity, suggesting chromosomal instability.

conclusionOur results show that a biallelic nonsense variant of MLH3 underlies a novel syndrome with susceptibility to classical or attenuated adenomatous polyposis and possibly extracolonic tumors, including breast cancer.

Indexed as

Genetic Predisposition to DiseaseAdenomatous Polyposis ColiAgedAllelesCodon, NonsenseExomeExome SequencingFemaleFinlandGerm-Line MutationHumansMaleMiddle AgedMutL ProteinsSwedenCodon, NonsenseMLH3 protein, humanMutL Proteinsbiallelic germline variantMLH3polyposis

Identifiers

PMID30573798
PMCPMC6752675
OpenAlexW2904047491

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.