Evidence map›Paper›PMID 30573742›Full record

ArticleScientific reports2018

Integrated analysis of microRNA and mRNA expression profiles in splenomegaly induced by non-cirrhotic portal hypertension in rats.

Junji Saruwatari, Chao Dong, Teruo Utsumi, Masatake Tanaka, Matthew McConnell, Yasuko Iwakiri

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Junji SaruwatariSection of Digestive Diseases, Yale University School of Medicine, New Haven, CT, USA.
Chao DongSection of Digestive Diseases, Yale University School of Medicine, New Haven, CT, USA.
Teruo UtsumiVA CT Healthcare System, West Haven, CT, USA.
Masatake TanakaSection of Digestive Diseases, Yale University School of Medicine, New Haven, CT, USA.
Matthew McConnellSection of Digestive Diseases, Yale University School of Medicine, New Haven, CT, USA.
Yasuko IwakiriSection of Digestive Diseases, Yale University School of Medicine, New Haven, CT, USA. yasuko.iwakiri@yale.edu.
Yale University · USConnecticut Health Foundation · USXiangya Hospital Central South University · CN

Funding

Training Program in Investigative HepatologyT32DK007356 · NIDDK · YALE UNIVERSITY · PI MICHAEL H NATHANSON · 1986 to 2026
$7.4M
The role of Kupffer cells in alcohol-induced liver diseaseR01AA025342 · NIAAA · YALE UNIVERSITY · PI IWAKIRI, YASUKO · 2017 to 2021
$1.9M
Alcohol metabolism in liver sinusoidal endothelial cellsR21AA023599 · NIAAA · YALE UNIVERSITY · PI IWAKIRI, YASUKO · 2015 to 2016
$437k
NIAAA NIH HHS R01 AA025342NIAAA NIH HHS R21 AA023599NIDDK NIH HHS T32 DK007356
6 · The paper itself

Abstract

The spleen plays an important role in the immune and hematopoietic systems. Splenomegaly is a frequent consequence of portal hypertension, but the underlying molecular and cellular mechanisms remain to be fully elucidated. In this study, we have performed a whole-genome microarray analysis combined with histological examination in enlarged spleens isolated from rats with partial portal vein ligation (PPVL) surgery to provide comprehensive profiles of microRNAs and their target mRNAs with a focus on their potential biological functions. A total of 964 mRNAs and 30 microRNAs showed significant differential expression in the spleens of PPVL rats compared to rats undergoing a sham procedure. Twenty-two down-regulated microRNAs were associated with significantly increased genes highly involved in fibrogenic activity and cell proliferation/migration (e.g., Ctgf, Serpine1, Col1a1). Consistently, histological analyses demonstrated increased splenic fibrosis and cell proliferation in the spleens of PPVL rats. Eight up-regulated microRNAs were associated with suppression of genes that are related to interferon-mediated antiviral activity in innate immune responses (e.g., Irf7, Dhx58). In conclusion, we determined a specific microRNA-mRNA network potentially implicated in the tissue fibrosis and cell proliferation in portal hypertension-induced splenomegaly. Our findings provide new insight into the mechanisms for regulation of spleen structure and function.

Indexed as

AnimalsGene Expression ProfilingGene Regulatory NetworksHypertension, PortalMaleMicroarray AnalysisMicroRNAsRatsRats, Sprague-DawleyRNA, MessengerSplenomegalySystems IntegrationTranscriptomeMicroRNAsRNA, Messenger

Identifiers

PMID30573742
PMCPMC6301948
OpenAlexW2904025615

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.