Evidence map›Paper›PMID 30573453›Full record

ArticleGenes & development2019

Anti-silencing factor Epe1 associates with SAGA to regulate transcription within heterochromatin.

Kehan Bao, Chun-Min Shan, James Moresco, John Yates, Songtao Jia

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
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  9. Mechanisms of chromatin-based epigenetic inheritance.Science China. Life sciences · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Kehan Bao *Department of Biological Sciences, Columbia University, New York, New York 10027, USA.
Chun-Min Shan *Department of Biological Sciences, Columbia University, New York, New York 10027, USA.
James MorescoDepartment of Molecular Medicine and Neurobiology, The Scripps Research Institute, La Jolla, California 92037, USA.
John YatesDepartment of Molecular Medicine and Neurobiology, The Scripps Research Institute, La Jolla, California 92037, USA.
Songtao JiaDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Columbia University · USScripps Research Institute · US

Funding

ZDS2P REGULATES SWE1P-DEPENDENT POLARIZED CELL GROWTH IN S CEREVISIAEP41RR011823 · NCRR · UNIVERSITY OF WASHINGTON · PI DAVIS, TRACY · 1996 to 2011
$24.7M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
Mechanism of heterochromatin assembly and oncogenic histone mutationsR35GM126910 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Songtao Jia · 2018 to 2026
$3.8M
Mechanism of heterochromatin assemblyR01GM085145 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI JIA, SONGTAO · 2008 to 2017
$3.0M
NCRR NIH HHS P41 RR011823NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R01 GM085145NIGMS NIH HHS R35 GM126910
6 · The paper itself

Abstract

Heterochromatin is a highly condensed form of chromatin that silences gene transcription. Although high levels of transcriptional activities disrupt heterochromatin, transcription of repetitive DNA elements and subsequent processing of the transcripts by the RNAi machinery are required for heterochromatin assembly. In fission yeast, a JmjC domain protein, Epe1, promotes transcription of DNA repeats to facilitate heterochromatin formation, but overexpression of Epe1 leads to heterochromatin defects. However, the molecular function of Epe1 is not well understood. By screening the fission yeast deletion library, we found that heterochromatin defects associated with Epe1 overexpression are alleviated by mutations of the SAGA histone acetyltransferase complex. Overexpressed Epe1 associates with SAGA and recruits SAGA to heterochromatin regions, which leads to increased histone acetylation, transcription of repeats, and the disruption of heterochromatin. At its normal expression levels, Epe1 also associates with SAGA, albeit weakly. Such interaction regulates histone acetylation levels at heterochromatin and promotes transcription of repeats for heterochromatin assembly. Our results also suggest that increases of certain chromatin protein levels, which frequently occur in cancer cells, might strengthen relatively weak interactions to affect the epigenetic landscape.

Indexed as

AcetylationChromatin Assembly and DisassemblyChromosomal InstabilityGene DeletionGene Expression Regulation, FungalHeterochromatinHistone AcetyltransferasesMicrosatellite RepeatsNuclear ProteinsProtein TransportSchizosaccharomycesSchizosaccharomyces pombe Proteinsepe1 protein, S pombeHeterochromatinHistone AcetyltransferasesNuclear ProteinsSchizosaccharomyces pombe ProteinsEpe1heterochromatinhistonemethylationSAGAtranscription

Identifiers

PMID30573453
PMCPMC6317313
OpenAlexW2905967540

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.