Evidence map›Paper›PMID 30572817›Full record

ArticleBMC bioinformatics2018

Towards practical privacy-preserving genome-wide association study.

Charlotte Bonte, Eleftheria Makri, Amin Ardeshirdavani, Jaak Simm, Yves Moreau, Frederik Vercauteren

Abstract read
In one paragraph

Article in BMC bioinformatics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Privacy-Enhancing Technologies in Biomedical Data Science.Annual review of biomedical data science · 2024
    Review
  4. Review
  5. Article
  6. SPIKE: secure and private investigation of the kidney exchange problem.BMC medical informatics and decision making · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Informed Consent in Biomedical Research.Computational and structural biotechnology journal · 2019
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Charlotte Bonteimec-COSIC, Department of Electrical Engineering, KU Leuven, Leuven, Belgium. cbonte@esat.kuleuven.be.ORCID http://orcid.org/0000-0002-4365-1845
Eleftheria Makriimec-COSIC, Department of Electrical Engineering, KU Leuven, Leuven, Belgium.
Amin ArdeshirdavaniSTADIUS KU Leuven, Leuven, Belgium.
Jaak SimmSTADIUS KU Leuven, Leuven, Belgium.
Yves MoreauSTADIUS KU Leuven, Leuven, Belgium.
Frederik Vercauterenimec-COSIC, Department of Electrical Engineering, KU Leuven, Leuven, Belgium.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe deployment of Genome-wide association studies (GWASs) requires genomic information of a large population to produce reliable results. This raises significant privacy concerns, making people hesitate to contribute their genetic information to such studies.

resultsWe propose two provably secure solutions to address this challenge: (1) a somewhat homomorphic encryption (HE) approach, and (2) a secure multiparty computation (MPC) approach. Unlike previous work, our approach does not rely on adding noise to the input data, nor does it reveal any information about the patients. Our protocols aim to prevent data breaches by calculating the χ

conclusionsWe show that full-scale privacy-preserving GWAS is practical, as long as the statistics can be computed by low degree polynomials. Our implementations demonstrated that both approaches are efficient. The secure multiparty computation technique completes its execution in approximately 2 ms for data contributed by one million subjects.

Indexed as

Genome-Wide Association StudyGenomicsHumansGenome-wide association study (GWAS)Homomorphic encryption (HE)Secure multiparty computation (MPC)

Identifiers

PMID30572817
PMCPMC6302495

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.