Evidence map›Paper›PMID 30571782›Full record

ArticlePloS one2018

Enrichment of Verrucomicrobia, Actinobacteria and Burkholderiales drives selection of bacterial community from soil by maize roots in a traditional milpa agroecosystem.

Eneas Aguirre-von-Wobeser, Jorge Rocha-Estrada, Lori R Shapiro, Mayra de la Torre

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
10.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 88 citations in OpenAlex.

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  20. Transcriptomic Responses ofFrontiers in microbiology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Eneas Aguirre-von-WobeserCátedras CONACyT, Centro de Investigación y Desarrollo en Agrobiotecnología Alimentaria (Consortium between Centro de Investigación y Desarrollo, A.C. and Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco), Pachuca Ciudad del Conocimiento y la Cultura, San Agustín Tlaxiaca, Hidalgo, Mexico.ORCID 0000-0002-5604-0525
Jorge Rocha-EstradaCátedras CONACyT, Centro de Investigación y Desarrollo en Agrobiotecnología Alimentaria (Consortium between Centro de Investigación y Desarrollo, A.C. and Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco), Pachuca Ciudad del Conocimiento y la Cultura, San Agustín Tlaxiaca, Hidalgo, Mexico.
Lori R ShapiroDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, Massachusetts, United States of America.
Mayra de la TorreCentro de Investigación y Desarrollo en Agrobiotecnología Alimentaria (Consortium between Centro de Investigación y Desarrollo, A.C. and Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco), Pachuca Ciudad del Conocimiento y la Cultura, San Agustín Tlaxiaca, Hidalgo, Mexico.
Cultura · MXConsejo Estatal Para la Cultura y las Artes de Hidalgo · MXHarvard University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Milpas are rain-fed agroecosystems involving domesticated, semi-domesticated and tolerated plant species that combine maize with a large variety of other crop, tree or shrub species. Milpas are low input and low-tillage, yet highly productive agroecosystems, which have been maintained over millennia in indigenous communities in Mexico and other countries in Central America. Thus, milpas may retain ancient plant-microorganisms interactions, which could have been lost in modern high-tillage monocultures with large agrochemical input. In this work, we performed high-throughput 16S ribosomal DNA sequencing of soil adjacent to maize roots and bulk soil sampled at 30 cm from the base of the plants. We found that the bacterial communities of maize root soil had a lower alpha diversity, suggesting selection of microorganisms by maize-roots from the bulk-soil community. Beta diversity analysis confirmed that these environments harbor two distinct microbial communities; differences were driven by members of phyla Verrucomicrobia and Actinobacteria, as well as the order Burkholderiales (Betaproteobacteria), all of which had higher relative abundance in soil adjacent to the roots. Numerous studies have shown the influence of maize plants on bacterial communities found in soil attached tightly to the roots; here we further show that the influence of maize roots at milpas on bacterial communities is detectable even in plant-free soil collected nearby. We propose that members of Verrucomicrobia and other phyla found in the rhizosphere may establish beneficial plant-microbe interactions with maize roots in milpas, and propose to address their cultivation for future studies on ecology and potential use.

Indexed as

ActinobacteriaBurkholderiaceaeSoil MicrobiologyVerrucomicrobiaCrop ProductionMicrobial ConsortiaPlant RootsZea mays

Identifiers

PMID30571782
PMCPMC6301694
OpenAlexW2906013873

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.