Evidence map›Paper›PMID 30568280›Full record

ArticleScientific reports2018

lncRNA profile study reveals the mRNAs and lncRNAs associated with docetaxel resistance in breast cancer cells.

Peide Huang, Fengyu Li, Lin Li, Yuling You, Shizhi Luo, Zhensheng Dong, Qiang Gao, Song Wu, Nils Brünner, Jan Stenvang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 59 citations in OpenAlex.

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  7. Long Noncoding RNAs in Taxane Resistance of Breast Cancer.International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Peide HuangSection of Pharmacotherapy, Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, 2200, Copenhagen N, Denmark.
Fengyu LiBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Lin LiBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Yuling YouBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Shizhi LuoBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Zhensheng DongBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Qiang GaoBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Song WuThe Affiliated Luohu Hospital of Shenzhen University, Shenzhen Luohu Hospital Group, Shenzhen, China. doctor_wusong@126.com.
Nils BrünnerSection of Pharmacotherapy, Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, 2200, Copenhagen N, Denmark. nbr@sund.ku.dk.
Jan StenvangSection of Pharmacotherapy, Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, 2200, Copenhagen N, Denmark. stenvang@sund.ku.dk.
BGI Group (China) · CNBGI GenomicsUniversity of Copenhagen · DKShenzhen Luohu People's Hospital · CNShenzhen University · CN

Funding

National Natural Science Foundation of China (National Science Foundation of China) 81502412
6 · The paper itself

Abstract

Resistance to adjuvant systemic treatment, including taxanes (docetaxel and paclitaxel) is a major clinical problem for breast cancer patients. lncRNAs (long non-coding RNAs) are non-coding transcripts, which have recently emerged as important players in a variety of biological processes, including cancer development and chemotherapy resistance. However, the contribution of lncRNAs to docetaxel resistance in breast cancer and the relationship between lncRNAs and taxane-resistance genes are still unclear. Here, we performed comprehensive RNA sequencing and analyses on two docetaxel-resistant breast cancer cell lines (MCF7-RES and MDA-RES) and their docetaxel-sensitive parental cell lines. We identified protein coding genes and pathways that may contribute to docetaxel resistance. More importantly, we identified lncRNAs that were consistently up-regulated or down-regulated in both the MCF7-RES and MDA-RES cells. The co-expression network and location analyses pinpointed four overexpressed lncRNAs located within or near the ABCB1 (ATP-binding cassette subfamily B member 1) locus, which might up-regulate the expression of ABCB1. We also identified the lncRNA EPB41L4A-AS2 (EPB41L4A Antisense RNA 2) as a potential biomarker for docetaxel sensitivity. These findings have improved our understanding of the mechanisms underlying docetaxel resistance in breast cancer and have provided potential biomarkers to predict the response to docetaxel in breast cancer patients.

Indexed as

Gene Expression Regulation, NeoplasticAntineoplastic AgentsBreast NeoplasmsCell Line, TumorComputational BiologyDocetaxelDrug Resistance, NeoplasmFemaleGene Expression ProfilingGene OntologyGene Regulatory NetworksHigh-Throughput Nucleotide SequencingHumansRNA, Long NoncodingRNA, MessengerAntineoplastic AgentsDocetaxelRNA, Long NoncodingRNA, Messenger

Identifiers

PMID30568280
PMCPMC6299474
OpenAlexW2904037458

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.