Evidence map›Paper›PMID 30567981›Full record

ArticleJournal of virology2019

Solution Structure, Self-Assembly, and Membrane Interactions of the Matrix Protein from Newcastle Disease Virus at Neutral and Acidic pH.

E V Shtykova, M V Petoukhov, L A Dadinova, N V Fedorova, V Yu Tashkin, T A Timofeeva, A L Ksenofontov, N A Loshkarev, L A Baratova, C M Jeffries and 2 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

E V ShtykovaA. V. Shubnikov Institute of Crystallography of Federal Scientific Research Centre Crystallography and Photonics, Russian Academy of Sciences, Moscow, Russia.
M V PetoukhovA. V. Shubnikov Institute of Crystallography of Federal Scientific Research Centre Crystallography and Photonics, Russian Academy of Sciences, Moscow, Russia.
L A DadinovaA. V. Shubnikov Institute of Crystallography of Federal Scientific Research Centre Crystallography and Photonics, Russian Academy of Sciences, Moscow, Russia.
N V FedorovaA. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, Russia.
V Yu TashkinA. N. Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Moscow, Russia.
T A TimofeevaD. I. Ivanovsky Institute of Virology, FSBI N. F. Gamaleya NRCEM, Ministry of Health of Russian Federation, Moscow, Russian.
A L KsenofontovA. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, Russia.
N A LoshkarevA. N. Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Moscow, Russia.
L A BaratovaA. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, Russia.
C M JeffriesEMBL/DESY, Hamburg, Germany.
D I SvergunD. I. Ivanovsky Institute of Virology, FSBI N. F. Gamaleya NRCEM, Ministry of Health of Russian Federation, Moscow, Russian.
O V BatishchevA. N. Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Moscow, Russia olegbati@gmail.com.ORCID 0000-0002-9581-2233
Lomonosov Moscow State University · RURussian Academy of Sciences · RUD.I. Ivanovsky Institute of Virology Russian Academy of Medical Sciences · RUMoscow Institute of Physics and Technology · RUEuropean Molecular Biology Laboratory · DEFrumkin Institute of Physical Chemistry and Electrochemistry · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Newcastle disease virus (NDV) is an enveloped paramyxovirus. The matrix protein of the virus (M-NDV) has an innate propensity to produce virus-like particles budding from the plasma membrane of the expressing cell without recruiting other viral proteins. The virus predominantly infects the host cell via fusion with the host plasma membrane or, alternatively, can use receptor-mediated endocytic pathways. The question arises as to what are the mechanisms supporting such diversity, especially concerning the assembling and membrane binding properties of the virus protein scaffold under both neutral and acidic pH conditions. Here, we suggest a novel method of M-NDV isolation in physiological ionic strength and employ a combination of small-angle X-ray scattering, atomic force microscopy with complementary structural techniques, and membrane interaction measurements to characterize the solution behavior/structure of the protein as well as its binding to lipid membranes at pH 4.0 and pH 7.0. We demonstrate that the minimal structural unit of the protein in solution is a dimer that spontaneously assembles in a neutral milieu into hollow helical oligomers by repeating the protein tetramers. Acidic pH conditions decrease the protein oligomerization state to the individual dimers, tetramers, and octamers without changing the density of the protein layer and lipid membrane affinity, thus indicating that the endocytic pathway is a possible facilitator of NDV entry into a host cell through enhanced scaffold disintegration.

Indexed as

AnimalsCell MembraneChickensEndocytosisHydrogen-Ion ConcentrationLipid BilayersNewcastle DiseaseNewcastle disease virusViral Matrix ProteinsVirus AssemblyVirus InternalizationLipid BilayersViral Matrix Proteinsab initio modelingatomic force microscopymatrix proteinNewcastle disease virusprotein structuresmall-angle X-ray scattering

Identifiers

PMID30567981
PMCPMC6401449
OpenAlexW2904603739

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.