Evidence map›Paper›PMID 30567979›Full record

ArticleJournal of virology2019

Comparative Analysis of Gammaherpesvirus Circular RNA Repertoires: Conserved and Unique Viral Circular RNAs.

Nathan A Ungerleider, Vaibhav Jain, Yiping Wang, Nicholas J Maness, Robert V Blair, Xavier Alvarez, Cecily Midkiff, Dennis Kolson, Shanshan Bai, Claire Roberts and 10 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
3.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 80 citations in OpenAlex.

  1. Review
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  14. Roles of circRNAs in viral pathogenesis.Frontiers in cellular and infection microbiology · 2025
    Review
  15. Article
  16. Virus-derived circular RNAs populate hepatitis C virus-infected cells.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  17. Review
  18. Article
  19. Virus-Encoded Circular RNAs: Role and Significance in Viral Infections.International journal of molecular sciences · 2023
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 1 country.

Nathan A Ungerleider *Department of Pathology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, Louisiana, USA.
Vaibhav Jain *Department of Biochemistry and Molecular Biology, University of Florida College of Medicine, Gainesville, Florida, USA.
Yiping Wang *Department of Molecular Genetics and Microbiology, University of Florida, Gainesville, Florida, USA.
Nicholas J ManessDepartment of Microbiology and Immunology, Tulane Regional Primate Center, Covington, Louisiana, USA.
Robert V BlairDivision of Comparative Pathology, Tulane Regional Primate Center, Covington, Louisiana, USA.
Xavier AlvarezDivision of Comparative Pathology, Tulane Regional Primate Center, Covington, Louisiana, USA.
Cecily MidkiffDivision of Comparative Pathology, Tulane Regional Primate Center, Covington, Louisiana, USA.
Dennis KolsonDivision of Comparative Pathology, Tulane Regional Primate Center, Covington, Louisiana, USA.
Shanshan BaiDepartment of Neurology, The Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Claire RobertsDepartment of Pathology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, Louisiana, USA.
Walter N MossRoy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, Iowa, USA.
Xia WangDepartment of Pathology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, Louisiana, USA.
Jacqueline SerfeczDepartment of Molecular Genetics and Microbiology, University of Florida, Gainesville, Florida, USA.
Michael SeddonReprocell USA, Beltsville, Maryland, USA.
Terri LehmanReprocell USA, Beltsville, Maryland, USA.
Tianfang MaDepartment of Structural and Cellular Biology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, Louisiana, USA.
Yan DongDepartment of Structural and Cellular Biology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, Louisiana, USA.
Rolf RenneDepartment of Biochemistry and Molecular Biology, University of Florida College of Medicine, Gainesville, Florida, USA.
Scott A TibbettsDepartment of Molecular Genetics and Microbiology, University of Florida, Gainesville, Florida, USA stibbe@ufl.edu erik@tulane.edu.
Erik K FlemingtonDepartment of Pathology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, Louisiana, USA stibbe@ufl.edu erik@tulane.edu.
Tulane University · USUniversity of Florida · USReproCELL (United States) · USIowa State University · USUniversity of Pennsylvania · US

Funding

Tulane NPRC SPF Sheltered Outdoor Enclosure ExpansionP51OD011104 · OD · TULANE UNIVERSITY OF LOUISIANA · PI L Lee HAMM · 2012 to 2026
$142.4M
"Project 3" MHV68 IncRNA/miRNA interaction in latency and lympomagenesisP01CA214091 · NCI · UNIVERSITY OF FLORIDA · PI ERIK K FLEMINGTON · 2017 to 2026
$15.9M
Studying the role of KSHV-encoded miRNAsR01CA119917 · NCI · UNIVERSITY OF FLORIDA · PI RENNE, ROLF F · 2008 to 2017
$3.2M
Regulation of Heme Oxygenase in HIV/HAND PathogenesisR01MH111389 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI KOLSON, DENNIS LARRY · 2016 to 2020
$2.9M
Role of MHV68 miRNAs in latencyand pathogenesisR01AI108407 · NIAID · UNIVERSITY OF FLORIDA · PI TIBBETTS, SCOTT A. · 2015 to 2019
$2.0M
Epstein Barr virus antisense transcriptionR01AI106676 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI FLEMINGTON, ERIK K · 2014 to 2018
$1.9M
Intercellular communication in Epstein Barr virus reactivationR01AI101046 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI FLEMINGTON, ERIK K · 2012 to 2016
$1.9M
An inevitable mechanism of resistance to androgen-directed therapyR01CA188609 · NCI · TULANE UNIVERSITY OF LOUISIANA · PI DONG, YAN · 2014 to 2018
$1.6M
Understanding Epstein Barr virus oncogenicity through non-coding RNA structureR00GM112877 · NIGMS · IOWA STATE UNIVERSITY · PI MOSS, WALTER · 2017 to 2019
$747k
NCI NIH HHS P01 CA214091NCI NIH HHS R01 CA119917NCI NIH HHS R01 CA188609NIAID NIH HHS R01 AI101046NIAID NIH HHS R01 AI106676NIAID NIH HHS R01 AI108407NIGMS NIH HHS R00 GM112877NIH HHS P51 OD011104NIMH NIH HHS R01 MH111389
6 · The paper itself

Abstract

Recent studies have identified circular RNAs (circRNAs) expressed from the Epstein-Barr virus (EBV) and Kaposi's sarcoma herpesvirus (KSHV) human DNA tumor viruses. To gain initial insights into the potential relevance of EBV circRNAs in virus biology and disease, we assessed the circRNAome of the interspecies homologue rhesus macaque lymphocryptovirus (rLCV) in a naturally occurring lymphoma from a simian immunodeficiency virus (SIV)-infected rhesus macaque. This analysis revealed rLCV orthologues of the latency-associated EBV circular RNAs circRPMS1_E4_E3a and circEBNA_U. Also identified in two samples displaying unusually high lytic gene expression was a novel rLCV circRNA that contains both conserved and rLCV-specific RPMS1 exons and whose backsplice junctions flank an rLCV lytic origin of replication (OriLyt). Analysis of a lytic infection model for the murid herpesvirus 68 (MHV68) rhadinovirus identified a cluster of circRNAs near an MHV68 lytic origin of replication, with the most abundant of these, circM11_ORF69, spanning the OriLyt. Lastly, analysis of KSHV latency and reactivation models revealed the latency associated circRNA originating from the vIRF4 gene as the predominant viral circRNA. Together, the results of this study broaden our appreciation for circRNA repertoires in the

Indexed as

AnimalsCell LineGammaherpesvirinaeGene Expression Regulation, ViralHerpesvirus 4, HumanHerpesvirus 8, HumanHumansLymphocryptovirusMacaca mulattaMaleRhadinovirusRNARNA, CircularRNA, ViralSimian Immunodeficiency VirusVirus LatencyRNARNA, CircularRNA, ViralcircRNAcircular RNAEBVEpstein-Barr virusKaposi’s sarcoma herpesvirusKSHVlymphocryptovirusMHV68murid herpesvirus 68rhadinovirus

Identifiers

PMID30567979
PMCPMC6401440
OpenAlexW2905245452

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.