Evidence map›Paper›PMID 30566883›Full record

ArticleImmunity2018

Commensals Suppress Intestinal Epithelial Cell Retinoic Acid Synthesis to Regulate Interleukin-22 Activity and Prevent Microbial Dysbiosis.

Mayara Grizotte-Lake, Guo Zhong, Kellyanne Duncan, Jay Kirkwood, Namrata Iyer, Irina Smolenski, Nina Isoherranen, Shipra Vaishnava

Open access · bronzeAbstract read
In one paragraph

Article in Immunity, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 188 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Retinoic acid in health and disease.Signal transduction and targeted therapy · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Epithelial sensing of vitamin A shapes intestinal antimicrobial defense.bioRxiv : the preprint server for biology · 2026
    Article
  10. Article
  11. Article
  12. Frontiers in nutrition · 2026
    Article
  13. Article
  14. Article
  15. Article
  16. Regulation of innate lymphoid cell by microbial metabolites.Journal of molecular medicine (Berlin, Germany) · 2025
    Review
  17. Article
  18. Review
  19. Frontiers in nutrition · 2025
    Article
  20. Review

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Mayara Grizotte-LakeMolecular Microbiology and Immunology, Brown University, Providence, RI 02912, USA.
Guo ZhongDepartment of Pharmaceutics, University of Washington, Seattle, WA 98195, USA.
Kellyanne DuncanMolecular Microbiology and Immunology, Brown University, Providence, RI 02912, USA.
Jay KirkwoodDepartment of Pharmaceutics, University of Washington, Seattle, WA 98195, USA.
Namrata IyerMolecular Microbiology and Immunology, Brown University, Providence, RI 02912, USA.
Irina SmolenskiMolecular Microbiology and Immunology, Brown University, Providence, RI 02912, USA.
Nina IsoherranenDepartment of Pharmaceutics, University of Washington, Seattle, WA 98195, USA.
Shipra VaishnavaMolecular Microbiology and Immunology, Brown University, Providence, RI 02912, USA. Electronic address: shipra_vaishnava@brown.edu.
Brown University · USUniversity of Washington · US

Funding

The role of Sirtuins in neurodegenerative diseaseP20GM109035 · NIGMS · BROWN UNIVERSITY · PI LIU, YAJUN · 2016 to 2025
$22.6M
Vitamin A metabolism at the host-microbiome interfaceR01DK113265 · NIDDK · BROWN UNIVERSITY · PI Shipra Vaishnava · 2018 to 2026
$4.0M
Mechanisms of Regulation of Retinoic Acid HomeostasisR01GM111772 · NIGMS · UNIVERSITY OF WASHINGTON · PI ISOHERRANEN, NINA · 2014 to 2021
$3.0M
NIDDK NIH HHS R01 DK113265NIGMS NIH HHS P20 GM109035NIGMS NIH HHS R01 GM111772
6 · The paper itself

Abstract

Retinoic acid (RA), a vitamin A metabolite, regulates transcriptional programs that drive protective or pathogenic immune responses in the intestine, in a manner dependent on RA concentration. Vitamin A is obtained from diet and is metabolized by intestinal epithelial cells (IECs), which operate in intimate association with microbes and immune cells. Here we found that commensal bacteria belonging to class Clostridia modulate RA concentration in the gut by suppressing the expression of retinol dehydrogenase 7 (Rdh7) in IECs. Rdh7 expression and associated RA amounts were lower in the intestinal tissue of conventional mice, as compared to germ-free mice. Deletion of Rdh7 in IECs diminished RA signaling in immune cells, reduced the IL-22-dependent antimicrobial response, and enhanced resistance to colonization by Salmonella Typhimurium. Our findings define a regulatory circuit wherein bacterial regulation of IEC-intrinsic RA synthesis protects microbial communities in the gut from excessive immune activity, achieving a balance that prevents colonization by enteric pathogens.

Indexed as

Alcohol OxidoreductasesAnimalsBacteriaDysbiosisEpithelial CellsHost Microbial InteractionsInterleukin-22InterleukinsIntestinal MucosaLymphocytesMice, Inbred C57BLMice, KnockoutMicrobiotaRNA, Ribosomal, 16SSalmonella typhimuriumSymbiosisAlcohol Oxidoreductasescis-retinol - androgen dehydrogenaseInterleukin-22InterleukinsRNA, Ribosomal, 16STretinoinantimicrobialscolonization resistancecommensaldysbiosisIECsIL-22RA-signalingRdh7retinoic acidvitamin A

Identifiers

PMID30566883
PMCPMC6319961
OpenAlexW2904782370

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.