Evidence map›Paper›PMID 30566756›Full record

ArticleChemistry (Weinheim an der Bergstrasse, Germany)2019

Increase of Redox Potential during the Evolution of Enzymes Degrading Recalcitrant Lignin.

Iván Ayuso-Fernández, Antonio L De Lacey, Francisco J Cañada, Francisco J Ruiz-Dueñas, Angel T Martínez

Abstract read
In one paragraph

Article in Chemistry (Weinheim an der Bergstrasse, Germany), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Setting the stage for evolution of a new enzyme.Current opinion in structural biology · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Peroxidase evolution in white-rot fungi follows wood lignin evolution in plants.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Iván Ayuso-FernándezCentro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040, Madrid, Spain.
Antonio L De LaceyInstituto de Catálisis y Petroleoquímica, CSIC, Marie Curie 2, E-28049, Madrid, Spain.
Francisco J CañadaCentro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040, Madrid, Spain.
Francisco J Ruiz-DueñasCentro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040, Madrid, Spain.
Angel T MartínezCentro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040, Madrid, Spain.ORCID http://orcid.org/0000-0002-1584-2863

Funding

Horizon 2020 Framework Programme BBI-PPP-2015-2-720297 (EnzOx2)Ministerio de Economía, Industria y Competitividad, Gobierno de España BFU2016-77835-RMinisterio de Economía, Industria y Competitividad, Gobierno de España BIO2017-86559-RMinisterio de Economía, Industria y Competitividad, Gobierno de España CTQ2015-71290-R
6 · The paper itself

Abstract

To investigate how ligninolytic peroxidases acquired the uniquely high redox potential they show today, their ancestors were resurrected and characterized. Unfortunately, the transient Compounds I (CI) and II (CII) from peroxide activation of the enzyme resting state (RS) are unstable. Therefore, the reduction potentials (E°') of the three redox couples (CI/RS, CI/CII and CII/RS) were estimated (for the first time in a ligninolytic peroxidase) from equilibrium concentrations analyzed by stopped-flow UV/Vis spectroscopy. Interestingly, the E°' of rate-limiting CII reduction to RS increased 70 mV from the common peroxidase ancestor to extant lignin peroxidase (LiP), and the same boost was observed for CI/RS and CI/CII, albeit with higher E°' values. A straightforward correlation was found between the E°' value and the progressive displacement of the proximal histidine Hϵ1 chemical shift in the NMR spectra, due to the higher paramagnetic effect of the heme Fe

Indexed as

PeroxidasesFungal ProteinsLigninFungal ProteinsLigninlignin peroxidasePeroxidasesancestral enzymesmolecular evolutionprotein NMRredox chemistrystopped-flow equilibrium

Identifiers

PMID30566756
PMCPMC6582443

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.