Evidence map›Paper›PMID 30566637›Full record

ArticleGenome biology and evolution2019

Dosage Compensation of the X Chromosomes in Bovine Germline, Early Embryos, and Somatic Tissues.

Jingyue Ellie Duan, Wei Shi, Nathaniel K Jue, Zongliang Jiang, Lynn Kuo, Rachel O'Neill, Eckhard Wolf, Hong Dong, Xinbao Zheng, Jingbo Chen and 1 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Jingyue Ellie DuanDepartment of Animal Science, University of Connecticut, Storrs, CT.
Wei ShiDepartment of Statistics, University of Connecticut, Storrs, CT.
Nathaniel K JueSchool of Natural Sciences, California State University, Monterey Bay, CA.
Zongliang JiangSchool of Animal Science, Louisiana State University, Agricultural Center, Baton Rouge, LA.
Lynn KuoDepartment of Statistics, University of Connecticut, Storrs, CT.
Rachel O'NeillDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, CT.
Eckhard WolfGene Center and Department of Biochemistry, Ludwig-Maximilians-Universität Muünchen, Germany.
Hong DongInstitute of Animal Science, Xinjiang Academy of Animal Sciences, Urumqi, Xinjiang, P.R. China.
Xinbao ZhengInstitute of Animal Science, Xinjiang Academy of Animal Sciences, Urumqi, Xinjiang, P.R. China.
Jingbo ChenInstitute of Animal Science, Xinjiang Academy of Animal Sciences, Urumqi, Xinjiang, P.R. China.
Xiuchun Cindy TianDepartment of Animal Science, University of Connecticut, Storrs, CT.
University of Connecticut · USXinjiang Academy of Animal Science · CNCalifornia State University, Monterey Bay · USLouisiana State University Agricultural Center · USLudwig-Maximilians-Universität München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dosage compensation of the mammalian X chromosome (X) was proposed by Susumu Ohno as a mechanism wherein the inactivation of one X in females would lead to doubling the expression of the other. This would resolve the dosage imbalance between eutherian females (XX) versus male (XY) and between a single active X versus autosome pairs (A). Expression ratio of X- and A-linked genes has been relatively well studied in humans and mice, despite controversial results over the existence of upregulation of X-linked genes. Here we report the first comprehensive test of Ohno's hypothesis in bovine preattachment embryos, germline, and somatic tissues. Overall an incomplete dosage compensation (0.5 < X:A < 1) of expressed genes and an excess X dosage compensation (X:A > 1) of ubiquitously expressed "dosage-sensitive" genes were seen. No significant differences in X:A ratios were observed between bovine female and male somatic tissues, further supporting Ohno's hypothesis. Interestingly, preimplantation embryos manifested a unique pattern of X dosage compensation dynamics. Specifically, X dosage decreased after fertilization, indicating that the sperm brings in an inactive X to the matured oocyte. Subsequently, the activation of the bovine embryonic genome enhanced expression of X-linked genes and increased the X dosage. As a result, an excess compensation was exhibited from the 8-cell stage to the compact morula stage. The X dosage peaked at the 16-cell stage and stabilized after the blastocyst stage. Together, our findings confirm Ohno's hypothesis of X dosage compensation in the bovine and extend it by showing incomplete and over-compensation for expressed and "dosage-sensitive" genes, respectively.

Indexed as

Dosage Compensation, GeneticX ChromosomeAnimalsCattleEmbryo, MammalianFemaleGene ExpressionMaleOocytesPseudoautosomal RegionsUp-Regulation

Identifiers

PMID30566637
PMCPMC6354180
OpenAlexW2912969020

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.