Evidence map›Paper›PMID 30566001›Full record

ArticleAmerican journal of physiology. Renal physiology2019

Truncating PKHD1 and PKD2 mutations alter energy metabolism.

Phillip Chumley, Juling Zhou, Sylvie Mrug, Balu Chacko, John M Parant, Anil K Challa, Landon S Wilson, Taylor F Berryhill, Stephen Barnes, Robert A Kesterson and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of physiology. Renal physiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Phillip ChumleyDepartment of Medicine, University of Alabama at Birmingham , Birmingham, Alabama.
Juling ZhouDepartment of Medicine, University of Alabama at Birmingham , Birmingham, Alabama.
Sylvie MrugDepartment of Psychology, University of Alabama at Birmingham , Birmingham, Alabama.
Balu ChackoDepartment of Medicine, University of Alabama at Birmingham , Birmingham, Alabama.
John M ParantTargeted Metabolomics and Proteomics Laboratory, University of Alabama at Birmingham , Birmingham, Alabama.
Anil K ChallaDepartment of Pharmacology and Toxicology, University of Alabama at Birmingham , Birmingham, Alabama.
Landon S WilsonTargeted Metabolomics and Proteomics Laboratory, University of Alabama at Birmingham , Birmingham, Alabama.
Taylor F BerryhillTargeted Metabolomics and Proteomics Laboratory, University of Alabama at Birmingham , Birmingham, Alabama.
Stephen BarnesTargeted Metabolomics and Proteomics Laboratory, University of Alabama at Birmingham , Birmingham, Alabama.
Robert A KestersonDepartment of Genetics, University of Alabama at Birmingham , Birmingham, Alabama.
P Darwin BellDepartment of Medicine, University of Alabama at Birmingham , Birmingham, Alabama.
Victor M Darley-UsmarDepartment of Pathology, University of Alabama at Birmingham , Birmingham, Alabama.
Bradley K YoderDepartment of Cell, Developmental, and Integrative Biology, University of Alabama at Birmingham, Alabama.
Michal MrugDepartment of Medicine, University of Alabama at Birmingham , Birmingham, Alabama.
University of Alabama at Birmingham · USTarget (United States) · US

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
University of Alabama at Birmingham's Diabetes Research CenterP30DK079626 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Kirk Michael Habegger · 2013 to 2026
$19.5M
UAB-UCSD O'Brien Core Center for Acute Kidney Injury ResearchP30DK079337 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI AGARWAL, ANUPAM · 2008 to 2022
$18.3M
UAB Recessive PKD Research and Translational Core CenterP30DK074038 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI YODER, BRADLEY K. · 2005 to 2019
$16.6M
Mechanisms of C3 effects in ARPKD pathogenesisR01DK097423 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MRUG, MICHAL · 2013 to 2017
$1.6M
Pathobiology of Complement C3 effects in ADPKDI01BX002298 · VA · BIRMINGHAM VA MEDICAL CENTER · PI MRUG, MICHAL · 2014 to 2017
–
BLRD VA I01 BX002298NCI NIH HHS P30 CA013148NIDDK NIH HHS P30 DK074038NIDDK NIH HHS P30 DK079337NIDDK NIH HHS P30 DK079626NIDDK NIH HHS R01 DK097423
6 · The paper itself

Abstract

Deficiency in polycystin 1 triggers specific changes in energy metabolism. To determine whether defects in other human cystoproteins have similar effects, we studied extracellular acidification and glucose metabolism in human embryonic kidney (HEK-293) cell lines with polycystic kidney and hepatic disease 1 ( PKHD1) and polycystic kidney disease (PKD) 2 ( PKD2) truncating defects along multiple sites of truncating mutations found in patients with autosomal recessive and dominant PKDs. While neither the PKHD1 or PKD2 gene mutations nor their position enhanced cell proliferation rate in our cell line models, truncating mutations in these genes progressively increased overall extracellular acidification over time ( P < 0.001 for PKHD1 and PKD2 mutations). PKHD1 mutations increased nonglycolytic acidification rate (1.19 vs. 1.03, P = 0.002), consistent with an increase in tricarboxylic acid cycle activity or breakdown of intracellular glycogen. In addition, they increased basal and ATP-linked oxygen consumption rates [7.59 vs. 5.42 ( P = 0.015) and 4.55 vs. 2.98 ( P = 0.004)]. The PKHD1 and PKD2 mutations also altered mitochondrial morphology, resembling the effects of polycystin 1 deficiency. Together, these data suggest that defects in major PKD genes trigger changes in mitochondrial energy metabolism. After validation in in vivo models, these initial observations would indicate potential benefits of targeting energy metabolism in the treatment of PKDs.

Indexed as

Cell ProliferationClustered Regularly Interspaced Short Palindromic RepeatsEnergy MetabolismGene EditingGlucoseHEK293 CellsHumansMutationProtein Kinase D2Protein KinasesReceptors, Cell SurfaceGlucosePKHD1 protein, humanProtein Kinase D2Protein KinasesReceptors, Cell SurfaceCas9 nucleasesCRISPRECARgene editinggene targetingOCR

Identifiers

PMID30566001
PMCPMC6442375
OpenAlexW2903968287

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.