Evidence map›Paper›PMID 30564970›Full record

ArticleMikrochimica acta2018

Double amplified colorimetric detection of DNA using gold nanoparticles, enzymes and a catalytic hairpin assembly.

Chanho Park, Hyunjun Park, Hye Jin Lee, Hye Sun Lee, Kyong Hwa Park, Chang-Hwan Choi, Sungsoo Na

Abstract read
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In one paragraph

Article in Mikrochimica acta, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 3 countries.

Chanho ParkDepartment of Mechanical Engineering, Korea University, Seoul, 136-701, Republic of Korea.
Hyunjun ParkDepartment of Mechanical Engineering, Korea University, Seoul, 136-701, Republic of Korea.
Hye Jin LeeDivision of Oncology/Hematology, Department of Internal Medicine, Korea University, Seoul, 136-701, South Korea.
Hye Sun LeeDivision of Oncology/Hematology, Department of Internal Medicine, Korea University, Seoul, 136-701, South Korea.
Kyong Hwa ParkDivision of Oncology/Hematology, Department of Internal Medicine, Korea University, Seoul, 136-701, South Korea.
Chang-Hwan ChoiDepartment of Mechanical Engineering, Stevens Institute of Technology, Hoboken, NJ, 07030, USA.
Sungsoo NaDepartment of Mechanical Engineering, Korea University, Seoul, 136-701, Republic of Korea. nass@korea.ac.kr.ORCID 0000-0003-4142-3627
Korea University · KRStevens Institute of Technology · US

Funding

National Research Foundation of Korea 2015M3A9D7031026National Research Foundation of Korea 2016R1A5A1010148
6 · The paper itself

Abstract

The authors describe an isothermal and ultrasensitive colorimetric DNA assay that consists of two amplification stages using enzymes and a catalytic hairpin assembly (CHA). The first step consists in the selective amplification of DNA using Klenow fragment and nicking enzyme. The second step consists in the amplification of the optical signal by using a catalytic hairpin assembly. After two amplification steps, the DNA reaction induces the aggregation of the red gold nanoparticles to give a blue color shift. The degree of aggregation can be quantified by measurement of the ratio of the UV-vis absorbances of the solutions at 620 and 524 nm which are the wavelengths of the aggregated gold nanoparticles and bare gold nanoparticles. The detection limit is as low as 3.1 fM. Due to the use of a specific enzyme, only the desired DNAs will be detected. The method can be applied to the determination of DNA of various lengths. Despite the presence of large amounts of wildtype DNA, it can readily detect a target DNA. Conceivably, the technique has a large potential because of its high sensitivity and selectivity. Graphical abstract Schematic presentation of DNA detection using gold nanoparticles (AuNP), enzymes and catalytic hairpin assembly (CHA). Effective DNA detection is achieved through the aggregation of AuNPs which is caused by DNA amplification using enzymes and signal amplification using CHA.

Indexed as

GoldCatalysisColorimetryColoring AgentsDNAMetal NanoparticlesNucleic Acid Amplification TechniquesColoring AgentsDNAGoldAuNPsCHADNA sensorHairpin DNAKlenow fragmentLiquid biopsyUV-vis absorbance

Identifiers

PMID30564970
OpenAlexW2904527255

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.