Evidence map›Paper›PMID 30563523›Full record

ArticleBMC medical genomics2018

A novel PAX5 rearrangement in TCF3-PBX1 acute lymphoblastic leukemia: a case report.

Thayana Conceição Barbosa, Bruno Almeida Lopes, Caroline Barbieri Blunck, Marcela Braga Mansur, Adriana Vanessa Santini Deyl, Mariana Emerenciano, Maria S Pombo-de-Oliveira

Open access · goldAbstract readCase Reports
In one paragraph

Article in BMC medical genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Thayana Conceição BarbosaDivision of Clinical Research, Research Center, Instituto Nacional de Câncer, Rio de Janeiro, RJ, Brazil.
Bruno Almeida LopesDivision of Clinical Research, Research Center, Instituto Nacional de Câncer, Rio de Janeiro, RJ, Brazil.
Caroline Barbieri BlunckDivision of Clinical Research, Research Center, Instituto Nacional de Câncer, Rio de Janeiro, RJ, Brazil.
Marcela Braga MansurDivision of Clinical Research, Research Center, Instituto Nacional de Câncer, Rio de Janeiro, RJ, Brazil.
Adriana Vanessa Santini DeylHospital de Clínicas de Porto Alegre, Porto Alegre, RS, Brazil.
Mariana EmerencianoDivision of Clinical Research, Research Center, Instituto Nacional de Câncer, Rio de Janeiro, RJ, Brazil.
Maria S Pombo-de-OliveiraPediatric Hematology-Oncology Program, Research Center, Instituto Nacional de Câncer, Rio de Janeiro, RJ, Brazil. mpombo@inca.gov.br.ORCID 0000-0002-1507-004X
Instituto Nacional de Câncer - INCA · BRHospital de Clínicas de Porto Alegre · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundChromosome translocations are a hallmark of B-cell precursor acute lymphoblastic leukemia (BCP-ALL). Additional genomic aberrations are also crucial in both BCP-ALL leukemogenesis and treatment management. Herein, we report the phenotypic and molecular cytogenetic characterization of an extremely rare case of BCP-ALL harboring two concomitant leukemia-associated chromosome translocations: t(1;19)(q23;q13.3) and t(9;17)(p13;q11.2). Of note, we described a new rearrangement between exon 6 of PAX5 and a 17q11.2 region, where intron 3 of SPECC1 is located. This rearrangement seems to disrupt PAX5 similarly to a PAX5 deletion. Furthermore, a distinct karyotype between diagnosis and relapse samples was observed, disclosing a complex clonal evolution during leukemia progression. CASE PRESENTATION: A 16-year-old boy was admitted febrile with abdominal and joint pain. At clinical investigation, he presented with anemia, splenomegaly, low white blood cell count and 92% lymphoblast. He was diagnosed with pre-B ALL and treated according to high risk GBTLI-ALL2009. Twelve months after complete remission, he developed a relapse in consequence of a high central nervous system and bone marrow infiltration, and unfortunately died.

conclusionsTo our knowledge, this is the first report of a rearrangement between PAX5 and SPECC1. The presence of TCF3-PBX1 and PAX5-rearrangement at diagnosis and relapse indicates that both might have participated in the malignant transformation disease maintenance and dismal outcome.

Indexed as

AdolescentBase SequenceChromosomes, Human, Pair 1Chromosomes, Human, Pair 19DNA Copy Number VariationsDNA Mutational AnalysisGene RearrangementHumansKaryotypingMaleOncogene Proteins, FusionPAX5 Transcription FactorPrecursor Cell Lymphoblastic Leukemia-LymphomaRecurrenceTranslocation, GeneticOncogene Proteins, FusionPAX5 protein, humanPAX5 Transcription FactorTCF3-PBX1 fusion protein, humander(9)t(9;17)(p13;q11.2) translocationNear-triploidy karyotypePAX5-SPECC1TCF3-PBX1

Identifiers

PMID30563523
PMCPMC6299517
OpenAlexW2903821441

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.