Evidence map›Paper›PMID 30563180›Full record

ArticleGenes2018

Genomic Characterization of a B Chromosome in Lake Malawi Cichlid Fishes.

Frances E Clark, Matthew A Conte, Thomas D Kocher

Abstract read
In one paragraph

Article in Genes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. A Vertebrate Toxin-Antidote System That Sabotages Mouse Embryogenesis.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Rye B chromosomes differently influence the expression of A chromosome-encoded genes depending on the host species.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2022
    Article
  5. Polygenic sex determination produces modular sex polymorphism in an African cichlid fish.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. B Chromosomes' Sequences in Yellow-Necked MiceLife (Basel, Switzerland) · 2021
    Article
  7. Review
  8. Article
  9. Article
  10. Origin of a Giant Sex Chromosome.Molecular biology and evolution · 2021
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Extensive Chromosomal Reorganization inInternational journal of molecular sciences · 2019
    Article
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Frances E ClarkDepartment of Biology, University of Maryland, College Park, MD 20742, USA. fclark@umd.edu.ORCID 0000-0001-6132-2976
Matthew A ConteDepartment of Biology, University of Maryland, College Park, MD 20742, USA. mconte@umd.edu.ORCID 0000-0003-2712-7960
Thomas D KocherDepartment of Biology, University of Maryland, College Park, MD 20742, USA. tdk@umd.edu.ORCID 0000-0002-7547-0133

Funding

National Science Foundation DEB-1143920
6 · The paper itself

Abstract

B chromosomes (Bs) were discovered a century ago, and since then, most studies have focused on describing their distribution and abundance using traditional cytogenetics. Only recently have attempts been made to understand their structure and evolution at the level of DNA sequence. Many questions regarding the origin, structure, function, and evolution of B chromosomes remain unanswered. Here, we identify B chromosome sequences from several species of cichlid fish from Lake Malawi by examining the ratios of DNA sequence coverage in individuals with or without B chromosomes. We examined the efficiency of this method, and compared results using both Illumina and PacBio sequence data. The B chromosome sequences detected in 13 individuals from 7 species were compared to assess the rates of sequence replacement. B-specific sequence common to at least 12 of the 13 datasets were identified as the "Core" B chromosome. The location of B sequence homologs throughout the genome provides further support for theories of B chromosome evolution. Finally, we identified genes and gene fragments located on the B chromosome, some of which may regulate the segregation and maintenance of the B chromosome.

Indexed as

B chromosomescoverage ratio analysisnext-generation sequencingsupernumerary chromosomes

Identifiers

PMID30563180
PMCPMC6316868

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.