Evidence map›Paper›PMID 30563027›Full record

ArticleGenes2018

De Novo Analysis Reveals Transcriptomic Responses in Eriobotrya japonica Fruits during Postharvest Cold Storage.

Shoukai Lin, Ti Wu, Hailan Lin, Yanqing Zhang, Shichang Xu, Jinge Wang, Bisha Wu, Yu Chen, Suying Lin, Dahe Lin and 3 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. The MADS-Box Transcription FactorFrontiers in plant science · 2021
    Article
  9. Article
  10. Primary Metabolism in Fresh Fruits During Storage.Frontiers in plant science · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Shoukai LinKey Laboratory of Loquat Germplasm Innovation and Utilization (Putian University), Fujian Province University, Putian 351100, China. linshoukai@ptu.edu.cn.
Ti WuFaculty of Agriculture, Dalhousie University, Truro, NS B2N 5E3, Canada. linhailan.ok@163.com.
Hailan LinKey Laboratory of Loquat Germplasm Innovation and Utilization (Putian University), Fujian Province University, Putian 351100, China. zyq190318@outlook.com.
Yanqing ZhangKey Laboratory of Loquat Germplasm Innovation and Utilization (Putian University), Fujian Province University, Putian 351100, China. 17720837915@163.com.
Shichang XuKey Laboratory of Loquat Germplasm Innovation and Utilization (Putian University), Fujian Province University, Putian 351100, China. 3170515028@fafu.edu.cn.
Jinge WangKey Laboratory of Loquat Germplasm Innovation and Utilization (Putian University), Fujian Province University, Putian 351100, China. wubisha@163.com.
Bisha WuKey Laboratory of Loquat Germplasm Innovation and Utilization (Putian University), Fujian Province University, Putian 351100, China. chenyu@ptu.edu.cn.
Yu ChenKey Laboratory of Loquat Germplasm Innovation and Utilization (Putian University), Fujian Province University, Putian 351100, China. linsuying@ptu.edu.cn.
Suying LinKey Laboratory of Loquat Germplasm Innovation and Utilization (Putian University), Fujian Province University, Putian 351100, China. dahelin01@163.com.
Dahe LinKey Laboratory of Loquat Germplasm Innovation and Utilization (Putian University), Fujian Province University, Putian 351100, China. wxm890626@163.com.
Xiumei WangKey Laboratory of Loquat Germplasm Innovation and Utilization (Putian University), Fujian Province University, Putian 351100, China. zhaoxiaoxu@ptu.edu.cn.
Xiaoxu ZhaoFujian Provincial Key Laboratory of Ecology-toxicological Effects & Control for Emerging Contaminants, Putian University, Putian 351100, China. tz983708@dal.ca.
Jincheng WuKey Laboratory of Loquat Germplasm Innovation and Utilization (Putian University), Fujian Province University, Putian 351100, China. wjc2384@163.com.
Putian University · CNDalhousie University · CAFujian Agriculture and Forestry University · CN

Funding

College Outstanding Young Researchers Cultivation Program of Fujian Education Department 2017Education and Research Project of Young and Middle-aged Teachers of Fujian Province JAT160434, JA15454Natural Science Foundation of China 31801462Natural Science Foundation of Fujian Province 2017J01644, 2017J01645Open Foundation of Key laboratory of Loquat Germplasm Innovation and Utilization (Putian University), Fujian Province University 2016001Research and Innovation Special Foundation of Putian University 2016CX001Scientific Research Project of Putian University 2017080, 2017081, 2018006, 2018064
6 · The paper itself

Abstract

Cold storage is the primary preservation method of postharvest loquat fruits. However, cold storage also results in many chilling injury physiological disorders called lignification, which decreases the quality and economic value of the fruits. Few studies to date have focused on the transcriptomic responses associated with lignification except lignin synthesis pathways. This study aimed to explore the changes of loquat transcriptome during long-term cold storage. Our results showed that the gene expression patterns were differed among the five stages. The differentially expressed genes (DEGs) in response to cold storage were more intense and complex in earlier stage. The membrane-related genes preferentially responded to low temperature and were followed by intracellular-located genes. The cold-induced pathways were mainly concerned with signal transduction and secondary metabolism (i.e., lignin, pectin, cellulose, terpenoid, carotenoid, steroid) in the first three stages and were chiefly related to primary metabolism in the later two stages, especially energy metabolism. Further investigation suggested that 503 protein kinases, 106 protein phosphatases, and 40 Ca

Indexed as

gene expressionlignificationloquat fruitpostharvest cold storageRNA-seqsignal transductionsugars and polysaccharides metabolismtranscriptomic responses

Identifiers

PMID30563027
PMCPMC6316545
OpenAlexW2903973548

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.