Evidence map›Paper›PMID 30561649›Full record

ArticleHuman molecular genetics2019

Transcriptome alterations in myotonic dystrophy skeletal muscle and heart.

Eric T Wang, Daniel Treacy, Katy Eichinger, Adam Struck, Joseph Estabrook, Hailey Olafson, Thomas T Wang, Kirti Bhatt, Tony Westbrook, Sam Sedehizadeh and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 129 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Aberrant Splicing ofCirculation. Genomic and precision medicine · 2026
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  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. miR-107 repressesMolecular therapy. Nucleic acids · 2025
    Article
  17. Article
  18. Article
  19. Skeletal muscle disorders as risk factors for type 2 diabetes.Molecular and cellular endocrinology · 2025
    Review
  20. Article

40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 2 countries.

Eric T WangDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Daniel TreacyDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Katy EichingerDepartment of Neurology, University of Rochester, Rochester, NY, USA.
Adam StruckDepartment of Biochemistry, University of Oregon, Eugene, OR, USA.
Joseph EstabrookDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Hailey OlafsonDepartment of Molecular Genetics & Microbiology, University of Florida, Gainesville, FL, USA.
Thomas T WangDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Kirti BhattDepartment of Neurology, University of Rochester, Rochester, NY, USA.
Tony WestbrookSchool of Life Sciences, Queen's Medical Center, University of Nottingham, Nottingham, UK.
Sam SedehizadehSchool of Life Sciences, Queen's Medical Center, University of Nottingham, Nottingham, UK.
Amanda WardDepartment of Pathology & Immunology, Baylor College of Medicine, Houston, TX, USA.
John DayDepartment of Neurology, Stanford University, Palo Alto, CA, USA.
David BrookSchool of Life Sciences, Queen's Medical Center, University of Nottingham, Nottingham, UK.
J Andrew BerglundDepartment of Molecular Genetics & Microbiology, University of Florida, Gainesville, FL, USA.
Thomas CooperDepartment of Pathology & Immunology, Baylor College of Medicine, Houston, TX, USA.
David HousmanDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Charles ThorntonDepartment of Neurology, University of Rochester, Rochester, NY, USA.
Christopher BurgeDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Massachusetts Institute of Technology · USQueen's Medical Centre · GBUniversity of Rochester · USBaylor College of Medicine · USUniversity of Florida · USPalo Alto University · USUniversity of Oregon · US

Funding

Training and Educational CoreU54NS048843 · NINDS · UNIVERSITY OF ROCHESTER · PI DIRKSEN, ROBERT T · 2003 to 2017
$21.9M
MOLECULAR PATHOGENESIS OF MYOTONIC DYSTROPHYR01AR045653 · NIAMS · BAYLOR COLLEGE OF MEDICINE · PI COOPER, THOMAS A · 1999 to 2018
$8.3M
Graduate Training in Genetics Administrative Supplement - Career Curriculum DevelopmentT32GM007413 · NIGMS · UNIVERSITY OF OREGON · PI GUILLEMIN, KAREN J · 1985 to 2022
$7.8M
Senator Paul D. Wellstone Muscular Dystrophy Specialized Research CenterP50NS048843 · NINDS · UNIVERSITY OF ROCHESTER · PI THORNTON, CHARLES A · 2018 to 2022
$7.1M
TROPONIN T ALTERNATIVE SPLICING IN EMBRYONIC HEARTR01HL045565 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI COOPER, THOMAS A · 1996 to 2018
$5.5M
Transcriptome processing networks in skeletal muscle: mechanisms and functionsR01AR060733 · NIAMS · BAYLOR COLLEGE OF MEDICINE · PI COOPER, THOMAS A · 2011 to 2023
$4.0M
Deep Sequencing Analysis of mRNA Isoform Expression Changes in Myotonic DystrophyRC2HG005624 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BURGE, CHRISTOPHER B, COOPER, THOMAS A · 2009 to 2010
$2.9M
Ppst-transcriptional regulation of gene expression in neuromuscular diseaseDP5OD017865 · OD · UNIVERSITY OF FLORIDA · PI WANG, ERIC T · 2013 to 2017
$2.0M
Medical Research Council G0802629NHGRI NIH HHS RC2 HG005624NHLBI NIH HHS R01 HL045565NIAMS NIH HHS R01 AR045653NIAMS NIH HHS R01 AR060733NIGMS NIH HHS T32 GM007413NIH HHS DP5 OD017865NINDS NIH HHS P50 NS048843NINDS NIH HHS U54 NS048843Wellcome TrustWellcome Trust 107562/Z/15/Z
6 · The paper itself

Abstract

Myotonic dystrophy (dystrophia myotonica, DM) is a multi-systemic disease caused by expanded CTG or CCTG microsatellite repeats. Characterized by symptoms in muscle, heart and central nervous system, among others, it is one of the most variable diseases known. A major pathogenic event in DM is the sequestration of muscleblind-like proteins by CUG or CCUG repeat-containing RNAs transcribed from expanded repeats, and differences in the extent of MBNL sequestration dependent on repeat length and expression level may account for some portion of the variability. However, many other cellular pathways are reported to be perturbed in DM, and the severity of specific disease symptoms varies among individuals. To help understand this variability and facilitate research into DM, we generated 120 RNASeq transcriptomes from skeletal and heart muscle derived from healthy and DM1 biopsies and autopsies. A limited number of DM2 and Duchenne muscular dystrophy samples were also sequenced. We analyzed splicing and gene expression, identified tissue-specific changes in RNA processing and uncovered transcriptome changes strongly correlating with muscle strength. We created a web resource at http://DMseq.org that hosts raw and processed transcriptome data and provides a lightweight, responsive interface that enables browsing of processed data across the genome.

Indexed as

AdultAlternative SplicingBase SequenceFemaleGene Expression ProfilingHeartHumansMaleMicrosatellite RepeatsMuscle, SkeletalMyocardiumMyotonic DystrophyPrincipal Component AnalysisRNARNA-Binding ProteinsRNA SplicingRNARNA-Binding Proteins

Identifiers

PMID30561649
PMCPMC6452195
OpenAlexW2904375316

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.