Evidence map›Paper›PMID 30560953›Full record

ArticleNature communications2018

Hidden heterogeneity and circadian-controlled cell fate inferred from single cell lineages.

Shaon Chakrabarti, Andrew L Paek, Jose Reyes, Kathleen A Lasick, Galit Lahav, Franziska Michor

Open access · goldAbstract readVideo-Audio Media
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 66 citations in OpenAlex.

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  10. Measuring FOXO Nuclear Shuttling Dynamics by Fluorescence Microscopy.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
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  15. Cell survival following direct executioner-caspase activation.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Shaon ChakrabartiDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, 02215, MA, USA.
Andrew L PaekDepartment of Systems Biology, Blavatnik Institute, Harvard Medical School, Boston, 02115, MA, USA.
Jose ReyesDepartment of Systems Biology, Blavatnik Institute, Harvard Medical School, Boston, 02115, MA, USA.
Kathleen A LasickUniversity of Arizona, Tucson, 85721, AZ, USA.
Galit LahavDepartment of Systems Biology, Blavatnik Institute, Harvard Medical School, Boston, 02115, MA, USA. Galit_Lahav@hms.harvard.edu.ORCID http://orcid.org/0000-0003-4758-6427
Franziska MichorDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, 02215, MA, USA. michor@jimmy.harvard.edu.ORCID http://orcid.org/0000-0003-4869-8842
Harvard University · USBroad Institute · USUniversity of Arizona · US

Funding

Project 3: Single Cell Measures of Intratumor Diversity for Optimal Breast Cancer TherapyU54CA193461 · NCI · DANA-FARBER CANCER INST · PI MICHOR, FRANZISKA · 2015 to 2020
$11.2M
Dynamics of Signaling Pathways: Mechanism and FunctionR01GM083303 · NIGMS · HARVARD MEDICAL SCHOOL · PI LAHAV, GALIT · 2008 to 2020
$5.2M
Dynamics of Cellular Senescence in Single CellsR01GM116864 · NIGMS · HARVARD MEDICAL SCHOOL · PI LAHAV, GALIT · 2017 to 2020
$1.6M
NCI NIH HHS U54 CA193461NIGMS NIH HHS R01 GM083303NIGMS NIH HHS R01 GM116864NIH HHS GM083303NIH HHS GM116864
6 · The paper itself

Abstract

The origin of lineage correlations among single cells and the extent of heterogeneity in their intermitotic times (IMT) and apoptosis times (AT) remain incompletely understood. Here we developed single cell lineage-tracking experiments and computational algorithms to uncover correlations and heterogeneity in the IMT and AT of a colon cancer cell line before and during cisplatin treatment. These correlations could not be explained using simple protein production/degradation models. Sister cell fates were similar regardless of whether they divided before or after cisplatin administration and did not arise from proximity-related factors, suggesting fate determination early in a cell's lifetime. Based on these findings, we developed a theoretical model explaining how the observed correlation structure can arise from oscillatory mechanisms underlying cell fate control. Our model recapitulated the data only with very specific oscillation periods that fit measured circadian rhythms, thereby suggesting an important role of the circadian clock in controlling cellular fates.

Indexed as

Models, BiologicalAlgorithmsApoptosisCell DifferentiationCell LineageCircadian ClocksCircadian RhythmHCT116 CellsHumansImage Processing, Computer-AssistedIntravital MicroscopySingle-Cell AnalysisSoftware

Identifiers

PMID30560953
PMCPMC6299096
OpenAlexW2903992755

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.