Evidence map›Paper›PMID 30560918›Full record

ArticleNature communications2018

HDX-MS reveals dysregulated checkpoints that compromise discrimination against self RNA during RIG-I mediated autoimmunity.

Jie Zheng, Chen Wang, Mi Ra Chang, Swapnil C Devarkar, Brandon Schweibenz, Gogce C Crynen, Ruben D Garcia-Ordonez, Bruce D Pascal, Scott J Novick, Smita S Patel and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 37 citations in OpenAlex.

  1. Mapping of RNA Helicase Dynamics by HDX-MS.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Proteomic Investigation of Immune Checkpoints and Some of Their Inhibitors.International journal of molecular sciences · 2024
    Review
  10. Review
  11. Article
  12. Review
  13. Fundamentals of HDX-MS.Essays in biochemistry · 2023
    Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Jie ZhengDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, 33458, USA. jzheng@scripps.edu.
Chen WangStructural Virology Section, Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.
Mi Ra ChangDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, 33458, USA.
Swapnil C DevarkarRobert Wood Johnson Medical School, Rutgers University, Piscataway, NJ, 08854, USA.
Brandon SchweibenzRobert Wood Johnson Medical School, Rutgers University, Piscataway, NJ, 08854, USA.
Gogce C CrynenThe Center for Computational Biology, The Scripps Research Institute, Jupiter, FL, 33458, USA.
Ruben D Garcia-OrdonezDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, 33458, USA.
Bruce D PascalDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, 33458, USA.
Scott J NovickDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, 33458, USA.
Smita S PatelRobert Wood Johnson Medical School, Rutgers University, Piscataway, NJ, 08854, USA.
Joseph MarcotrigianoStructural Virology Section, Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA. joseph.marcotrigiano@nih.gov.
Patrick R GriffinDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, 33458, USA. pgriffin@scripps.edu.ORCID http://orcid.org/0000-0002-3404-690X
Scripps Research Institute · USRutgers, The State University of New Jersey · USNational Institutes of Health · US

Funding

Project 9P50GM103368 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI ARNOLD, EDWARD · 2012 to 2016
$20.0M
X-ray Crystallographic Fragment Screening CoreU54AI150472 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI TORBETT, BRUCE EDWARD · 2019 to 2021
$15.7M
X-ray Crystallographic Fragment Screening CoreU54GM103368 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI TORBETT, BRUCE EDWARD · 2017 to 2018
$11.1M
Mechanistic studies of nucleic acid enzymes involved in DNA replication, transcription, and innate immunity.R35GM118086 · NIGMS · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI SMITA S PATEL · 2016 to 2026
$8.9M
Discrimination of nonself by innate immune receptorsZIAAI001218 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI MARCOTRIGIANO, JOSEPH · 2017 to 2021
$4.0M
Structural and mechanistic studies of self and non-self recognition by RIG-IR01GM111959 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI BREWER, GARY A., PATEL, SMITA S · 2014 to 2017
$1.8M
NIGMS NIH HHS P50 GM103368NIGMS NIH HHS R01 GM111959NIGMS NIH HHS R35 GM118086NIGMS NIH HHS U54 GM103368NIH HHS GM103368NIH HHS GM111959
6 · The paper itself

Abstract

Retinoic acid inducible gene-I (RIG-I) ensures immune surveillance of viral RNAs bearing a 5'-triphosphate (5'ppp) moiety. Mutations in RIG-I (C268F and E373A) lead to impaired ATPase activity, thereby driving hyperactive signaling associated with autoimmune diseases. Here we report, using hydrogen/deuterium exchange, mechanistic models for dysregulated RIG-I proofreading that ultimately result in the improper recognition of cellular RNAs bearing 7-methylguanosine and N

Indexed as

Adenosine TriphosphatasesAutoimmunityCaspase Activation and Recruitment DomainDEAD Box Protein 58Deuterium Exchange MeasurementGain of Function MutationGuanosineImmunity, InnateInterferon-Induced Helicase, IFIH1Mass SpectrometryMethylationModels, MolecularMutagenesis, Site-DirectedProtein BindingReceptors, ImmunologicRecombinant Proteins7-methylguanosineAdenosine TriphosphatasesDEAD Box Protein 58GuanosineIFIH1 protein, humanInterferon-Induced Helicase, IFIH1Receptors, ImmunologicRecombinant ProteinsRIGI protein, humanRNA CapsRNA, Double-StrandedRNA, Viral

Identifiers

PMID30560918
PMCPMC6299088
OpenAlexW2904017346

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.